1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaccttgccccacaaacaaaccataataggttactagaaaatgacaatgtattctgaaaatgtcttaatgagtacttttataatgctttttttttgcagcATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTACTATTTCCAAAGG
species | Glycine max |
transcript | GLYMA18G35390.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAC ATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTAEST: gi|208292242|gb|GE093392.1|GE093392
genomic: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAGtatgattttc ... tttttgcagcATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTA
EST: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAC ATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTEST: gi|21256179|gb|BQ453067.1|BQ453067
genomic: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAGtatgattttc ... tttttgcagcATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTT
EST: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAC ATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTAEST: gi|7233537|gb|AW568942.1|AW568942
genomic: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAGtatgattttc ... tttttgcagcATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTA
EST: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAC ATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTAEST: gi|192316960|gb|FK010891.1|FK010891
genomic: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAGtatgattttc ... tttttgcagcATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTA
EST: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAC ATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTAEST: gi|11413728|gb|BF425739.1|BF425739
genomic: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAGtatgattttc ... tttttgcagcATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTA
EST: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAC ATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTAEST: gi|207837745|gb|GD810289.1|GD810289
genomic: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAGtatgattttc ... tttttgcagcATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTA
EST: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAC ATGGATTTCCGGCCTTGTTCAAACACTACTCTAEST: gi|22929555|gb|BU546694.1|BU546694
genomic: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAGtatgattttc ... tttttgcagcATGGATTTCCGGCCTTGTTCAAACACTACTCTA
EST: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAC ATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTA
genomic: AACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAGtatgattttc ... tttttgcagcATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTA
aatgtattctgaaaatgtcttaatgagtacttttataatgctttttttttgcagcATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTACTATTTCCAAAGG
tcttaat putative branch site (score: 3)
tgctttttttttgc putative PPT
tacttttataatgctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccttgccccacaaacaaaccataataggttactagaaaatgacaatgtattctgaaaatgtcttaatgagtacttttataatgctttttttttgcagcATGGATTTCCGGCCTTGTTCAAACACTACTCTATGCTGATTTCTTCTATTACTATTTCCAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -cttgccc
- - - - - - - -acaaacc
- - - - - - - - - - - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctt