1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttaggttatggttcctttgggacactgggtaaaatgtacagacataagcattctttgtgatggattgttgtcttaatagtgttggatcttttgattacagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTACGCTCCAACGAAAGCGGGCAAGAATTGCTGATAAAAAGAAGAGAATTGC
species | Glycine max |
transcript | GLYMA18G26190.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTAEST: gi|209699698|gb|BW652083.1|BW652083
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaattcc ... ttgattacagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTA
EST: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTAEST: gi|6482119|gb|AW201390.1|AW201390
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaattcc ... ttgattacagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTA
EST: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG GGAAAAAGGTGAGCAAAGCTNCTAAGATACAAAGACTGGTCACCCCTCTTAEST: gi|10846028|gb|BF069017.1|BF069017
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaattcc ... ttgattacagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTA
EST: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTAEST: gi|192321667|gb|FK014011.1|FK014011
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaattcc ... ttgattacagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTA
EST: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG GGAAAAAGGTGAGCAAAGCTCCCAAGATACAAAGACTGGTCEST: gi|19053288|gb|BM731955.1|BM731955
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaattcc ... ttgattacagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTC
EST: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTAEST: gi|192296729|gb|FG991297.1|FG991297
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaattcc ... ttgattacagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTA
EST: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAA-GACTGGTCAEST: gi|298187174|gb|HO034323.1|HO034323
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaattcc ... ttgattacagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCA
EST: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTG GGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTA
genomic: TGTTAGGAAGTATGTCAACACCTACCGTCGTACATTTACGACAAAAGCTGgtaaaattcc ... ttgattacagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTA
aagcattctttgtgatggattgttgtcttaatagtgttggatcttttgattacagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTACGCTCCAACGAAAGCGGGCAAGAATTGCTGATAAAAAGAAGAGAATTGC
tctttt CT-rich tract
ttttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggttatggttcctttgggacactgggtaaaatgtacagacataagcattctttgtgatggattgttgtcttaatagtgttggatcttttgattacagGGAAAAAGGTGAGCAAAGCTCCTAAGATACAAAGACTGGTCACCCCTCTTACGCTCCAACGAAAGCGGGCAAGAATTGCTGATAAAAAGAAGAGAATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - tggttcc
- - - - - - - - - - gacactg
- - - - - - - - - - - - - - - - aatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgttgg