1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ttagttactgcttcaagatgatttgattgacatattatgagaatttatttcagctatgtcttgttctgtctaatacttgtgttgaaacttgtaggTGTGCTGGATATCACAGTGAAGTTGATGCTCCTAGCCGAAGACTTGCTAAACCACTAATCTTTTGTAGGACTGAAAGTGACTGCCCCATGGAAAATGGCT
species | Glycine max |
transcript | GLYMA18G20800.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGATATGGATCTGGTGATGGTGGATCCCTGG TGTGCTGGATATCACAGTGAAGTTGATGCTCCTAGCCGAAGACTTGCTAAAEST: gi|9986269|gb|BE660377.1|BE660377
genomic: GGATATGGATCTGGTGATGGTGGATCCCTGGttagttactg ... aacttgtaggTGTGCTGGATATCACAGTGAAGTTGATGCTCCTAGCCGAAGACTTGCTAAA
EST: TGAAGAAGAGAGGGATTGAGGATATGGATCTGGTGATGGTGGATCCCTGG TGTGCTGGATATCACAGTGAAGTTGATGCTCCTAGCCGAAGACTTGCTAAAEST: gi|208217027|gb|GE010257.1|GE010257
genomic: TGAAGAAGAGAGGGATTGAGGATATGGATCTGGTGATGGTGGATCCCTGGttagttactg ... aacttgtaggTGTGCTGGATATCACAGTGAAGTTGATGCTCCTAGCCGAAGACTTGCTAAA
EST: TGAAGAAGAGAGGGATTGAGGATATGGATCTGGTGATGGTGGATCCCTGG TGTGCTGGATATCACAGTGAAGTTGATGCTCCTAGCCGAAGACTTGCTEST: gi|7589252|gb|AW705030.1|AW705030
genomic: TGAAGAAGAGAGGGATTGAGGATATGGATCTGGTGATGGTGGATCCCTGGttagttactg ... aacttgtaggTGTGCTGGATATCACAGTGAAGTTGATGCTCCTAGCCGAAGACTTGCT
EST: TGAAGAAGAGAGGGATTGAGGATATGGATCTGGTGATGGTGGATCCCTGG TGTGCTGGATATCACAGTGAAGTTGATGCTCCTAGCCGAAGACTTGCTAAA
genomic: TGAAGAAGAGAGGGATTGAGGATATGGATCTGGTGATGGTGGATCCCTGGttagttactg ... aacttgtaggTGTGCTGGATATCACAGTGAAGTTGATGCTCCTAGCCGAAGACTTGCTAAA
gaatttatttcagctatgtcttgttctgtctaatacttgtgttgaaacttgtaggTGTGCTGGATATCACAGTGAAGTTGATGCTCCTAGCCGAAGACTTGCTAAACCACTAATCTTTTGTAGGACTGAAAGTGACTGCCCCATGGAAAATGGCT
gtctaat putative branch site (score: 3)
taatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagttactgcttcaagatgatttgattgacatattatgagaatttatttcagctatgtcttgttctgtctaatacttgtgttgaaacttgtaggTGTGCTGGATATCACAGTGAAGTTGATGCTCCTAGCCGAAGACTTGCTAAACCACTAATCTTTTGTAGGACTGAAAGTGACTGCCCCATGGAAAATGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA