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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggaccttttgaaacctttaacaaaaccaatttgattcatgtttgggagttattattggaacataacgaaggtgatttttatttttatttttatgcacagGCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATTACAATTCAAAATAGTCCACAATGCCACCTCAAGTTTGACAACTGTAATGGGGTCA

Basic information

species Glycine max
transcript GLYMA18G19670.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G19670.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0127g00400.t01 (Vitis vinifera), 3'ss of exon 5
gtgaggaccttttgaaacctttaacaaaaccaatttgattcatgtttgggagttattattggaacataacgaaggtgatttttatttttatttttatgcacagGCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATTACAATTCAAAATAGTCCACAATGCCACCTCAAGTTTGACAACTGTAATGGGGTCA
            | |   |    | |||||   |   ||||       | |   |||||    |   || | | || | ||  ||| |  ||||  |||||||||| || |||||||||| || |||||    ||||| || ||||| ||||||||||| ||||| |||||||||||||||||||||||||| |  || ||| 
-----------gtaaggaccaccagaaaactgctggaattcccaaagagtaa--attatgaccatgcaatgtatgtaaattg-attgtatttttgttgcacagGCACTGAGGTTCTATGGAAGCTTTAACGTGACAGTCACGGGCATAACAATTCAAAACAGTCCCCAATGCCACCTCAAGTTTGACAACTGCATGGGAGTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208323735|gb|GE122306.1|GE122306
EST:     ATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACT                         GCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATTACAATT
genomic: ATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACTgtgaggacct ... ttatgcacagGCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATTACAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagttattattggaacataacgaaggtgatttttatttttatttttatgcacagGCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATTACAATTCAAAATAGTCCACAATGCCACCTCAAGTTTGACAACTGTAATGGGGTCA
               acataac  putative branch site (score: 3)
                              tttttatttttatttt  putative PPT
                       aaggtgatttttattt  TA-rich tract