1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatattactataatcataattaaatgtcctatttgtttaattaatattgaggagtttactctatctcttttattttctcctgtccaatctgattatagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATTGCTACTGAAAAGGAGCTAAAG
species | Glycine max |
transcript | GLYMA18G17240.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTAAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATTEST: gi|254334329|gb|GR844114.1|GR844114
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTAAGACAGgtatattact ... ctgattatagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTAAGACAG GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATTEST: gi|19937096|gb|BQ081145.1|BQ081145
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTAAGACAGgtatattact ... ctgattatagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATT
EST: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTAAGACAG GAGCGTGATCCAATTGAEST: gi|254322978|gb|GR835693.1|GR835693
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTAAGACAGgtatattact ... ctgattatagGAGCGTGATCCAATTGA
EST: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTAAGACAG GAGCGTGATCCAATTGAGAGA
genomic: ATCCTGGCAGCACATACCGTACACGTGATGAGATTTCTGGTGTAAGACAGgtatattact ... ctgattatagGAGCGTGATCCAATTGAGAGA
atattgaggagtttactctatctcttttattttctcctgtccaatctgattatagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATTGCTACTGAAAAGGAGCTAAAG
tctcttttattttctc CT-rich tract
tatctcttttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattactataatcataattaaatgtcctatttgtttaattaatattgaggagtttactctatctcttttattttctcctgtccaatctgattatagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTACTATTGACTCACGAGATTGCTACTGAAAAGGAGCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT