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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtctcactcatttatttataccctataaatgccaatgtcatgattataaagagaaaatgtaatttattttggttattgtaccagATGATAAAATTTATTCAGTCAACTCAATTTATCAACAAGGACTTGTGCATGTACCATAATGAAACCAATACACCTGCATTGGCCAGAACTTCAAATCTGA

Basic information

species Glycine max
transcript GLYMA18G16990.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G16990.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 10
-------gt-ttgtgtctcactcatttatttataccctataaatgccaatgtcatgattataaagagaaaatgtaatttattttggttattgtaccagATGATAAAATTTATTCAGTCAACTCAATTTATCAACAAGGACTTGTGCATGTACCATAATGAAACCAATACACCTGCATTGGCCAGAACTTCAAATCTGA
       || |||||| | |     || ||| |  |    || |    || | |   || | ||  |    | | | || || |    |      |||||||| |||||||| || || ||||||||||| ||||||||||||   |||||||||  |||||||||||| |||||| ||||  | ||||| |||||||
gtaggtggtgttgtgtgttataatgttgttttttgctg--aactatggatatgacttttgttaaaggtttcttttaattcttctttccacaacctcagATGATCAAATTTATCCAATCCACTCAATTTATTAACAAGGACTTGCATATGTACCATGTTGAAACCAATACCCCTGCACTGGCACGGACTTCCAATCTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccaatgtcatgattataaagagaaaatgtaatttattttggttattgtaccagATGATAAAATTTATTCAGTCAACTCAATTTATCAACAAGGACTTGTGCATGTACCATAATGAAACCAATACACCTGCATTGGCCAGAACTTCAAATCTGA
             attataaagagaaaat  TA-rich tract