Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattttctatattctagcagtatagtttaattctttatgttcaatttgatagttatgatcaaagtacttgttcagGCAGGTGATAGTGATCATTTGGCTGCTGCCTTCCTCCTATGCCATAACATTTCTCATGGGATTAATCTGCATAAAACTCCAGTTTTGCAGTACTTGTATT

Basic information

species Glycine max
transcript GLYMA18G16700.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G16700.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0026g01480.t01 (Vitis vinifera), 3'ss of exon 14
------------------------------------gttattttctatattctag--cagtatagtttaattctttatgttcaatttgatagttatgatcaaagtacttgttcagGCAGGTGATAGTGATCATTTGGCTGCTGCCTTCCTCCTATGCCATAACATTTCTCATGGGATTAATCTGCATAAAACTCCAGTTTTGCAGTACTTGTATT
                                     || ||||||    | ||   || | |||||  |||  |||| ||     |  || ||    |   |  |  | | ||||||||||||   || |||||||||||||| ||||| || |||||||||||||||||||||||||||||||  ||| | || |||||||||||  | ||||
gttctgcttctcttcttcttcttctttttattttcttttcttttctcctctgtacttcattttagttctatttattattttatggctattaattcatgtttcacaatctatgcagGCAGGTGATGTAGACCATTTGGCTGCTGCATTCCTTCTCTGCCATAACATTTCTCATGGGATTAATCTGCGGAAATCCCCTGTTTTGCAGTATCTCTATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23727375|gb|BU761715.1|BU761715
EST:     GTGAATCTAAAGGAATGACCACAATAAAGTTGCGGCCTCACTGTGGAGAG                         GCAGGTGATAGTGATCATTTGGCTGCTGCCTTCCTCCTATGCCATAACATT
genomic: GTGAATCTAAAGGAATGACCACAATAAAGTTGCGGCCTCACTGTGGAGAGgttattttct ... acttgttcagGCAGGTGATAGTGATCATTTGGCTGCTGCCTTCCTCCTATGCCATAACATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatagtttaattctttatgttcaatttgatagttatgatcaaagtacttgttcagGCAGGTGATAGTGATCATTTGGCTGCTGCCTTCCTCCTATGCCATAACATTTCTCATGGGATTAATCTGCATAAAACTCCAGTTTTGCAGTACTTGTATT
                                              cttgttc  CT-rich tract
     tttaattctttatgtt  TA-rich tract