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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtactttatgagcctgtcgaatgatattattttatctgataacactttgttgataatgtaatttcttgcttttcagGCCTGGAGTTTGGGGAAATGAAG

Basic information

species Glycine max
transcript GLYMA18G14510.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12690416|gb|BG156752.1|BG156752
EST:     TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTACATTG                         GCCTGGAGTTTGGGGAAATGAAG
genomic: TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTACATTGgtcagtactt ... tgcttttcagGCCTGGAGTTTGGGGAAATGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatattattttatctgataacactttgttgataatgtaatttcttgcttttcagGCCTGGAGTTTGGGGAAATGAAG
                                        tttcttgcttttc  CT-rich tract
     ttattttatctgataa  TA-rich tract