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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaacatttttttttagttttaaatgcttcataatcttatcgacattctttcattaaccttgaagtttatcattatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAAC

Basic information

species Glycine max
transcript GLYMA18G10220.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10220.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------------------------------------------------------------------gtaagaaacatttttttttagttttaaatgcttcataatcttat-cgacattctttca--ttaaccttgaagt--ttatcattatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAAC----
                                                                                               || || | |  ||| || |  | | | |   | | ||||| |   || |  || | |   | | | || | |   |   ||| | |  ||||||  ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| || ||||| || || ||||| ||| | ||||||| |||||||    
gcaagagaactaaatcccatacatatgcttgcatgaaataaatgaagttctgcaatacgatttctccatatgcaatgactatagacctttgggaatatgacagagatttcttgacatatgattagcttaaaatctaagatgagaacctgtgaatcttatcatgtaataactggaattgtttgctcttattctttcagTCAATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgacattctttcattaaccttgaagtttatcattatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACTATCAAAGCCATAACAACTGGCTGGTTGCATCCAAGCATTAAC
            cattaac  putative branch site (score: 2)
                                      ttttcttatcgtttc  putative PPT
                    ttgaagtttatcatta  TA-rich tract