1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aggaaacctttttgttattatctaaagtctgcattgcttaacaagttgctggaaccttctgcctgctttatttaattgactgatctttttcctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTGGAGATTGCTTTGGGGCATTATAAGAAATGG
species | Glycine max |
transcript | GLYMA18G04510.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGEST: gi|14011388|gb|BG726302.1|BG726302
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAG
EST: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGEST: gi|192322908|gb|FK014839.1|FK014839
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGG
EST: CAAGCATTACTAAGTGAACTGAGCTCTCTCAATGATTACATCGAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGAEST: gi|207764166|gb|GD737981.1|GD737981
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGG
EST: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGATATCTEST: gi|13480266|gb|BG509609.1|BG509609
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCT
EST: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGEST: gi|151410703|gb|EV280518.1|EV280518
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGG
EST: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGEST: gi|23726127|gb|BU761045.1|BU761045
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGG
EST: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGEST: gi|209721279|gb|BW665773.1|BW665773
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGG
EST: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGEST: gi|9259381|gb|BE347528.1|BE347528
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGG
EST: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGEST: gi|117557695|gb|EG702080.1|EG702080
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGG
EST: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGEST: gi|6070095|gb|AW099652.1|AW099652
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGG
EST: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCAEST: gi|17963072|gb|BM269825.1|BM269825
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCA
EST: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGEST: gi|151395906|gb|EV265783.1|EV265783
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGG
EST: CAAGTATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAA TGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGG
genomic: CAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATCAAGGAAAAtgtatgacat ... cctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGG
ttgctggaaccttctgcctgctttatttaattgactgatctttttcctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTGGAGATTGCTTTGGGGCATTATAAGAAATGG
gactgat putative branch site (score: 3)
ctgatctttttcctct CT-rich tract
tttatttaattgact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggaaacctttttgttattatctaaagtctgcattgcttaacaagttgctggaaccttctgcctgctttatttaattgactgatctttttcctctttgtaGGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTGGAGATTGCTTTGGGGCATTATAAGAAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - -agtctgc
- - - - - - - - - - - - - - - - - - - - - - - tgctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgactg