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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacaatgataaacttcaattctgcttaactacatggttttgtgccgttttccagtttttgcactgctgttcagtgttattttgctaatcggtatatttgtctgtgatatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT

Basic information

species Glycine max
transcript GLYMA18G02960.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 4
gtaagacaatgataaacttcaattctgcttaactacatggttttgtgccgttttccagtttttgcactgctgttcagtgttattttgctaatcggtatatttgtctgtgatatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT
|||    | |  | | ||  | || ||   || ||     || |  || | ||| || | |||| |    | | || |   |     | |||   | | ||||  |||  |   |||||  |  ||| || |||||||| |  |||||||| || || || || |||||||| ||||||||||| || || ||| |||||||||| |||||||| ||| | ||  |
gtattgaactattgatctgaacttttgtccaatta-----ttattcgctgctttgcattatttggatca-tatcca-tacaa----accaatgattttttttgcatgtatttgttgtaa--tacagGAGATTCTGAACCGGCCAAGATGTTCGATAGGACGGCTAATTTGGCCAACAATCAAATTATCAACTATCGATGTGATCCATCTGAGAAGTGGCTTGTGCT

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 4
gtaagacaatgataaacttcaattctgcttaacta-----catggttttgtgccgttt---tccagtttttgc--actgctgttcagtgttat-tttgctaatcggtatatttgtctgtgatatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT
|||    | |  | | ||  | || ||   || ||     |   | ||||     |||   ||   |   | |  ||   || |   | ||   | |  |  | |  || ||||  |||  |   |||||  |  ||| || |||||||| |  |||||||| || || || || |||||||| ||||||||||| || || ||| |||||||||| |||||||| ||| | ||  |
gtattgaactattgatctgaacttttgtccaattattattcgctgctttgcattatttggatcatatccatacaaaccaatgattttttttgcatgtatttgttgtaatttttgcatgtatttgttgtaa--tacagGAGATTCTGAACCGGCCAAGATGTTCGATAGGACGGCTAATTTGGCCAACAATCAAATTATCAACTATCGATGTGATCCATCTGAGAAGTGGCTTGTGCT

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagacaatgataaacttcaattctgcttaactacatggttttgtgccgttttccagtttttgcactgctgttcagtgttattttgctaat---cggtatatttgtctgtgatatatgt----aacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT
                                                           || |  | | | |   | ||| |||||  | ||     || | || || | | || |   |       || ||||||| ||||| || || ||||||||||| |||||||| |||||||| ||||||||||| || || ||||  ||   ||||  |||||| |||||||| ||
----------------------------------------------------------gttgtatatttcagcctactgtcattttcttcatatcttgtgttttcgtttctaattttccttcgggttttatagGTGATTCTGAGCCAGTTAAGATGTTTGATAGAACAGCCAATTTGGCCAACAATCAAATTATAAACTATAAGTGCTCTCCTAATGAGAAGTGGTTGGTTTT

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagacaatgataaacttcaattctgcttaactacatggttttgtgccgttttccagtttttgcactgctgttcagtgttattttgctaatcggtatatttgtctgtgatatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT
                                       ||||| |  | ||  |    | |    || ||    |   |   | || |  |    || |||| ||  |||||       ||  |||||| ||||| || || ||||||||||| ||||| || |||||||||||||||||||| || || ||||  ||   ||||  |||||| |||||||||||
---------------------------------------gttttatatctttaacttactgtca-gcttcttcatatcatgtatatgttgtttctcatttttg-cttcgatat-------ttccagGTGATTCTGAGCCAGTTAAGATGTTTGATAGAACGGCTAATTTGGCAAACAATCAAATTATAAACTATAAGTGCTCTCCTAATGAGAAGTGGTTGGTCTT

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 4
----------------------gtaagacaatgataaacttcaattctgcttaactacatggttttgtgccgtt------ttccagtttttg---cactgctgttcagtgttattttg-ctaatcggtatatttgtctgtgatatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT
                      | |  |   ||  |     || |  |    |  |  |   |||| |  | |       |||  |||| ||    | |     |  ||||  ||| |  |  | | |     ||  | || | | | |  | | ||||||| |||||||||||||| ||||||||||| || || ||| ||| ||||||||| |||||||| ||| |||||||||| ||||| || |||||||| ||
gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttgattcatgtttatggtatattttcacttggtgtcttttggatttgttgtttccaatggttttgttgtctctctcatttagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0027g01340.t01 (Vitis vinifera), 3'ss of exon 1
gtaagacaatgataaacttcaattctgcttaactacatggttttgtgccgttttccagtttttgcactgctgttcagtgttattttgctaatcggtatatttgtctgtgatatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT--------------------------------------------------------
                                                                                 |   |  | |   ||| |  |   | |   ||   | | |   |||||| || ||||||||||| ||||||||||||||    ||||||  ||||||||| |||||||| ||| ||| |||||| ||||| || |||||||| ||                                                        
--------------------------------------------------------------------------------gagcatagtcac--gtagacctcagtatatcattgatcaatcaaaggtgattcagaacctgtaaaaatgtttgagagaactattaatttgataaacaatcagATAATTAACTATCGATATGATCCGTCTGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCGGGTTCACCTGAGAGACCACAGCTTGTCAAAGGGAATATGC

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S7_102V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagacaatgataaacttcaattctgctta-actacatggttttgtgccgttttccagtttttgcactgctgttcagtgttattttgctaatcggtata-tttgtctgtgatatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT
                        |  |||    | |||   |   || ||  ||     | |  |  | || | |||| |  |  | | ||     | | ||| ||  |  |   ||||||    |||||| |||||||||||||||||||||||||| ||||||||||||     ||| || || || ||||||||||| || || || ||||| ||| | ||  |
-----------------------acaacttgtgttgcatttctcattggcgaattttgtgtatgacttttctat-cagtttggtgctccaaacaatgagactttttccctcgtgcctgtaac----agGTGAATCTGAACCTGTAAAGATGTTTGAGAGGACAGCAAATTTGAGTGGCAACCAGATCATCAATTATAGATGCGACCCGTCAGAGAAGTGGCTTGTGCT

upper sequence: GLYMA18G02960.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S147_10V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagacaatgataaacttcaatt--ctgcttaactacatggttt-tgtgccgttttccagtttttgcactgctgttcagtgttattttgctaatcggtatatttgtctgtgatatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT
||| ||      |    |   | |  | | |  |  | || | || |||    ||  | ||||||    | | | ||  |  ||       |||| | | | | | | || |   | |||||    ||||||| |||||||||||||||||||||||||| ||||||||  ||     ||| || || ||||| || ||||| || ||  ||||||||||| | || ||
gtacgaacccttttgtttctgactgtccgatgtatgagatagcttctgttggattggcgagttttctatcagttctt--gcattcacacattaat-gctttctctctttggg---tctgtaa----tagGTGAATCTGAACCTGTAAAGATGTTTGAGAGGACAGCAAACCTGAGTGGCAACCAGATCATTAACTACAGATGCGACCCCGCTGAGAAATGGCTTGTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcagtgttattttgctaatcggtatatttgtctgtgatatatgtaacttgtagGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGTGATCCTTCTGAGAAATGGTTGGTCTT
                                      atatatgtaa  TA-rich tract