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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactactatctctattatgctatcacctacttacaacacacactttatgcctctctttctttctttgtcttagGACACAGAGATCATAGACCAGATTGACCGAGATGTCAATCGTACTCATCCAGATATACACTTCTTCTCTGGTGATTCTCTTTTTGCAAAATCTAATCAG

Basic information

species Glycine max
transcript GLYMA18G00430.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G00430.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G13730.2 (Arabidopsis thaliana), 3'ss of exon 4
-------------gtactactatctctattatgctatcacctacttacaacacaca------ctttatgcctctctttctttc--tttgtc-----ttagGACACAGAGATCATAGACCAGATTGACCGAGATGTCAATCGTACTCATCCAGATATACACTTCTTCTCTGGTGATTCTCTTTTTGCAAAATCTAATCAG
              |  | || | |   | | |  ||  | |  ||    || | |      |   ||| |  || |  ||||   |||       | ||||||||||  |  | || || || || || ||||| |  ||||||||||||||||| ||||| |||||||| |||||     |||||||||||||||||
aaaagatccttttctcttcctgttttagtaaagtaattccgtttttgttgcatataaagctgcaaaatgaccttcctgatttcaacttgatactgttcagGACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAG

upper sequence: GLYMA18G00430.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0029g01350.t01 (Vitis vinifera), 3'ss of exon 4
-------------------gtactactatctc-tattatgctatcacctac--ttacaacacacactttatgcctctctttctttctttg----tcttagGACACAGAGATCATAGACCAGATTGACCGAGATGTCAATCGTACTCATCCAGATATACACTTCTTCTCTGGTGATTCTCTTTTTGCAAAATCTAATCAG
                   | ||||  |  |  ||||| |  || |  ||   | ||         |||       |  ||     ||      | ||||||||||||||||||||| || ||||||||||||||||| || ||||||||||| ||  ||||||||||||| ||  | |  | ||||||| | ||||||
cccatttctttatgctattggactataaattggtattaggagatgatatatggtcactgatggtgttttgaattatttattacaatttgaacatttttagGACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctatcacctacttacaacacacactttatgcctctctttctttctttgtcttagGACACAGAGATCATAGACCAGATTGACCGAGATGTCAATCGTACTCATCCAGATATACACTTCTTCTCTGGTGATTCTCTTTTTGCAAAATCTAATCAG
         tacttac  putative branch site (score: 1)
                      cactttatgcctctct  putative PPT
                       actttat  TA-rich tract