1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccaagtgaagttcatgatcgtaatcctctttcttaagattattattactatttcttttaatgtttccttactcatttagtttacctatatgtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG
species | Glycine max |
transcript | GLYMA17G37730.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTCTTCAGCAATGTCTGCGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|31474478|gb|CD416506.1|CD416506
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGANACAAEST: gi|120494113|gb|EH222280.1|EH222280
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|151412034|gb|EV281845.1|EV281845
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|16345364|gb|BI970959.1|BI970959
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|12773437|gb|BG238364.1|BG238364
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAGACAAEST: gi|12773864|gb|BG238791.1|BG238791
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGACACAAEST: gi|298170230|gb|HO018854.1|HO018854
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|298167144|gb|HO010583.1|HO010583
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTEST: gi|38193189|gb|CF922395.1|CF922395
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATT
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|21602650|gb|BQ612981.1|BQ612981
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|8283304|gb|BE020865.1|BE020865
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|6666885|gb|AW278344.1|AW278344
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|7795478|gb|AW780875.1|AW780875
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAGGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|15200385|gb|BI424322.1|BI424322
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|31312367|gb|CD397570.1|CD397570
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|17519104|gb|BM188146.1|BM188146
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|20448913|gb|BQ253037.1|BQ253037
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|17153474|gb|BM143407.1|BM143407
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|120494291|gb|EH222458.1|EH222458
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|192322713|gb|FK014404.1|FK014404
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGGAACAAEST: gi|13478215|gb|BG507779.1|BG507779
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|120494235|gb|EH222402.1|EH222402
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|151412841|gb|EV282653.1|EV282653
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|10236137|gb|BE804955.1|BE804955
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAATCAAEST: gi|209699340|gb|BW664059.1|BW664059
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|192297663|gb|FG989582.1|FG989582
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|26269345|gb|CA820408.1|CA820408
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|298169760|gb|HO021120.1|HO021120
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGGTTCGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|298187150|gb|HO034299.1|HO034299
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|31462386|gb|CD404414.1|CD404414
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAEST: gi|9204083|gb|BE330307.1|BE330307
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
EST: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGG TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
genomic: CTTCTTCAGCAATGTCTGTGAGCTCGATTTGGTTTTTAACTTCCACAAGGtttgttaatt ... gtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAA
tactatttcttttaatgtttccttactcatttagtttacctatatgtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG
tccttac putative branch site (score: 2)
tgtcttc putative PPT
tttcttttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaagtgaagttcatgatcgtaatcctctttcttaagattattattactatttcttttaatgtttccttactcatttagtttacctatatgtcttcaaggTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
ccaagtg
- - - - - - catgatc