1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
tttgttgactttgatcataatcacgtgattaaatttctggcataatcgggaaaataatactgaagttacatgttatgcctctattgatacagaTAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCTACCCGAAAAATAAAGATAGTGTGGAGCTTATGAAGTCCTATTTTGATGA
species | Glycine max |
transcript | GLYMA17G36850.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGA TAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCTEST: gi|193677302|gb|FK620524.1|FK620524
genomic: CATTGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGGtttgttgact ... ttgatacagaTAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCT
EST: CATTGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGA TAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCTEST: gi|192308454|gb|FK002826.1|FK002826
genomic: CATTGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGGtttgttgact ... ttgatacagaTAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCT
EST: CATTGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGA TAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCT
genomic: CATTGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGGtttgttgact ... ttgatacagaTAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCT
ggcataatcgggaaaataatactgaagttacatgttatgcctctattgatacagaTAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCTACCCGAAAAATAAAGATAGTGTGGAGCTTATGAAGTCCTATTTTGATGA
tattgat putative branch site (score: 3)
cctctatt CT-rich tract
aaaataatactgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttgactttgatcataatcacgtgattaaatttctggcataatcgggaaaataatactgaagttacatgttatgcctctattgatacagaTAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCTACCCGAAAAATAAAGATAGTGTGGAGCTTATGAAGTCCTATTTTGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT