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...tttcatacaaaaacacaatgaagttaaagttcaaattgttatttgaatgagcatctgcctgattccttcatttaactgaaatttataaggatgttatcagTGTTGGCTTGATTGTCTTTGGTGCGTTTGTTGCTGGAGCACGGGATTTATCTTTTGATGCTTATGGCTATGCTGTTGTTTTCATGTCGAACATCGCCACA
species | Glycine max |
transcript | GLYMA17G32030.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTAGAGTTTGTTCTGGTGGGGCAGAGATATACACCTTCTGTTATTTTCAG TGTTGGCTTGATTGTCTTTGGTGCGTTTGTTGCTGGAGCACGGGATTTATCEST: gi|17022709|gb|BM093743.1|BM093743
genomic: GTAGAGTTTGTTCTGGTGGGGCAGAGATATACACCTTCTGTTATTTTCAGgtaaattgct ... atgttatcagTGTTGGCTTGATTGTCTTTGGTGCGTTTGTTGCTGGAGCACGGGATTTATC
EST: GTAGAGTTTGTTCTGGTGGGGCAGAGATATACACCTTCTGTTATTTTCAG TGTTGGCTTGATTGTTTTTGGTGCGTTTGTTGCTGGAGCACGGGATTTATC
genomic: GTAGAGTTTGTTCTGGTGGGGCAGAGATATACACCTTCTGTTATTTTCAGgtaaattgct ... atgttatcagTGTTGGCTTGATTGTCTTTGGTGCGTTTGTTGCTGGAGCACGGGATTTATC
aatgagcatctgcctgattccttcatttaactgaaatttataaggatgttatcagTGTTGGCTTGATTGTCTTTGGTGCGTTTGTTGCTGGAGCACGGGATTTATCTTTTGATGCTTATGGCTATGCTGTTGTTTTCATGTCGAACATCGCCACA
atttaac putative branch site (score: 3)
ttcatttaactgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcatacaaaaacacaatgaagttaaagttcaaattgttatttgaatgagcatctgcctgattccttcatttaactgaaatttataaggatgttatcagTGTTGGCTTGATTGTCTTTGGTGCGTTTGTTGCTGGAGCACGGGATTTATCTTTTGATGCTTATGGCTATGCTGTTGTTTTCATGTCGAACATCGCCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- tcataca
- - - - - aaacaca
- - - - - - - - - - - - - - - - - - - - - - gaatgag
- - - - - - - - - - - - - - - - - - - - - - - - - -catctgc