Sequence
atgc intronic sequence ATGC exonic sequence...gtatttgttgaaaagtctatctcattatcatatgaattaactgaaagaaaaacattttattctacaatatctcttggttattcctaggctgttcgaaaagATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAGCTACTAATACGTGCAAACCAAGGCCACACAGTAAAG
Basic information
species | Glycine max |
transcript | GLYMA17G29450.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G29450.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv15s0048g00280.t01 (Vitis vinifera), 3'ss of exon 3
------------gtatt--tgttgaaaagtctatctcattatcatatgaattaactgaaagaaaaacattttattctacaatatctcttggttattccta-ggctgttcgaaaagATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAGCTACTAATACGTGCAAACCAAGGCCACACAGTAAAG
| || | | | | ||| ||| || | || ||| | | | | || | | ||| | || | ||| | |||||| | || |||||||||||||| ||||||||| ||||||| ||||||||||| | || || ||||||||||| |||||||||| |
ttggcataaaccgctttgacataaacatatttatttcaaggtcctctgtattt-cacataaattgctcccccataatgta-tatttaatgcattttctaaagGCTGTCAGGAAGGATAATAAGCAGCGATTTAGCCTCCTAGAAGAAAATGGGGAGCTTTTGATTCGGGCAAACCAAGGGCACACAGTAACG
upper sequence: GLYMA17G29450.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv15s0048g00300.t01 (Vitis vinifera), 3'ss of exon 3
------------gtatt--tgttgaaaagtctatctcattatcatatgaattaactgaaagaaaaacattttattctacaatatctcttggttattccta-ggctgttcgaaaagATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAGCTACTAATACGTGCAAACCAAGGCCACACAGTAAAG
| || | | | | ||| |||| ||| | || ||| | | | | || | | ||| | || | ||| | |||||| | || |||||||||||||| ||| ||||| ||||||| ||||||||||| | || || ||||||||||| |||||||||| |
ttgacataaactgctttgacataaacatatttatttcataatcctctgtattt-cacataaattgctcccccataatgta-tatttaatgcattttctgaagGCTGTCAGGAAGGATAATAAGCAGCGATTTGGCCTCCTAGAAGAAAATGGGGAGCTTTTGATTCGGGCAAACCAAGGGCACACAGTAACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agaaaaacattttattctacaatatctcttggttattcctaggctgttcgaaaagATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAGCTACTAATACGTGCAAACCAAGGCCACACAGTAAAG
attttattctacaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttgttgaaaagtctatctcattatcatatgaattaactgaaagaaaaacattttattctacaatatctcttggttattcctaggctgttcgaaaagATAATAAGCAGCGGTTTAGCCTCTTAGAAGAGAATGGGGAGCTACTAATACGTGCAAACCAAGGCCACACAGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - aagaaaa