1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgagtgtgaattgttacacttcgaatatttacactaaccatttttgaatctagctgtttttccatttagtttattatataaagtatttgtttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTCACACCTCCACAAACACAGCCATTGGCATCTTACCCTCAAAATATACGCG
species | Glycine max |
transcript | GLYMA17G26440.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTG CGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTCEST: gi|193552765|gb|FK507002.1|FK507002
genomic: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTGgtaatgttta ... tttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTC
EST: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTG CGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTCEST: gi|16105990|gb|BI893730.1|BI893730
genomic: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTGgtaatgttta ... tttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTC
EST: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTG CGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTC
genomic: GCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTGgtaatgttta ... tttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTC
tgaatctagctgtttttccatttagtttattatataaagtatttgtttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTCACACCTCCACAAACACAGCCATTGGCATCTTACCCTCAAAATATACGCG
tttatttc CT-rich tract
tttttccatttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagtgtgaattgttacacttcgaatatttacactaaccatttttgaatctagctgtttttccatttagtttattatataaagtatttgtttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTCACACCTCCACAAACACAGCCATTGGCATCTTACCCTCAAAATATACGCG
- gagtgtg
- - - - - - - - - - - - - - - - - ctaacca