1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaaaataaaatcaaaatgttttcttaaaccaaatacatctaatatttcccttctgatatcattgtaaattgtaaccatgcttcattgtgtatatttttagGGGTGGAATCACGTCTTGCGGCTCTGACTGTAGATACTGCTGAATTAAGCAAAATCTCAGCACTCGCTAATCGTGCTGACCTTCCCTCCACCTTCCAACC
species | Glycine max |
transcript | GLYMA17G24440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTTCGCCCCCTTCATATTGAAGGCGAGTTATATGTAGGGATTCCACCAG GGGTGGAATCACGTCTTGCGGCTCTGACTGTAGATACTGCTGAATTAAGCAEST: gi|27426543|gb|CA938063.1|CA938063
genomic: AGTTCGCCCCCTTCATATTGAAGGCGAGTTATATGTAGGGATTCCACCAGgtaatttttt ... atatttttagGGGTGGAATCACGTCTTGCGGCTCTGACTGTAGATACTGCTGAATTAAGCA
EST: AGTTCGCCCCCTTCATATTGAAGGCGAGTTATATGTAGGGATTCCACCAG GGGTGGAATCACGTCTTGCGGCTCTGACTGTAGATACTGCTGAATTAAGCAEST: gi|27426469|gb|CA937989.1|CA937989
genomic: AGTTCGCCCCCTTCATATTGAAGGCGAGTTATATGTAGGGATTCCACCAGgtaatttttt ... atatttttagGGGTGGAATCACGTCTTGCGGCTCTGACTGTAGATACTGCTGAATTAAGCA
EST: AGTTCGCCCCCTTCATATTGAAGGCGAGTTATATGTAGGGATTCCACCAG GGGTGGAATCACGTCTTGCGGCTCTGACTGTAGATACTGCTGAATTAAGCA
genomic: AGTTCGCCCCCTTCATATTGAAGGCGAGTTATATGTAGGGATTCCACCAGgtaatttttt ... atatttttagGGGTGGAATCACGTCTTGCGGCTCTGACTGTAGATACTGCTGAATTAAGCA
ttcccttctgatatcattgtaaattgtaaccatgcttcattgtgtatatttttagGGGTGGAATCACGTCTTGCGGCTCTGACTGTAGATACTGCTGAATTAAGCAAAATCTCAGCACTCGCTAATCGTGCTGACCTTCCCTCCACCTTCCAACC
ttgtaac putative branch site (score: 2)
tattttt putative PPT
attgtgtatattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaataaaatcaaaatgttttcttaaaccaaatacatctaatatttcccttctgatatcattgtaaattgtaaccatgcttcattgtgtatatttttagGGGTGGAATCACGTCTTGCGGCTCTGACTGTAGATACTGCTGAATTAAGCAAAATCTCAGCACTCGCTAATCGTGCTGACCTTCCCTCCACCTTCCAACC
-aaaataa
- - - - - - - - - - - - - aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgct