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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagctgcacataattggtttttctcttaattcaacttatttgtctcattctgttgacatttatgggttaattagGTCATGCATGGTGCGGATCGAGATATTGCATGGCTTCAACGAGACTTTGGAATTTACATTTGTAATTTGTTTGACACTCACCAG

Basic information

species Glycine max
transcript GLYMA17G24130.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G24130.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os10g30100.1 (Oryza sativa), 3'ss of exon 3
-----------------gttagctgcacataattggtttttctctta-attcaacttatttgtctcattctgttgacatttatgggttaattagGTCATGCATGGTGCGGATCGAGATATTGCATGGCTTCAACGAGACTTTGGAATTTACATTTGTAATTTGTTTGACACTCACCAG
                  | |  | || | |  ||  | || |  ||   || | || | |     |||||  |  |  ||||||   |  ||||| ||||||||||| ||||| |||||   |||||||||||| |||||||| || ||  | || ||  | ||||||||   ||||
gtataacatgctctttcatcattttcatacatgtgcatattgttatatgctccaattgtgtag---attctcattgctcttatggcaca--tagGTAATGCATGGTGCAGATCGTGATATAATATGGCTTCAACGGGACTTTGGCATATATGTATGCAACCTTTTTGACACAGGCCAG

upper sequence: GLYMA17G24130.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G35910.1 (Arabidopsis thaliana), 3'ss of exon 3
-gttagctgcacataattggtttttctcttaa----ttcaacttatttgtctcattctgttgacatttatgggt-taattagGTCATGCATGGTGCGGATCGAGATATTGCATGGCTTCAACGAGACTTTGGAATTTACATTTGTAATTTGTTTGACACTCACCAG
  ||  |     ||| ||   ||   |   ||    |  ||  ||| | |    | ||  ||| || | |   | ||||||||| |||||||| || ||||||||||||   ||||||||||| ||||| || || ||  | || ||| | ||||||||    |||
gtttttcctgggatacttcaattccattacaaaaggtctaaaatatattttctgtgct-ctgaaatctgtttatgtaattagGTAATGCATGGAGCAGATCGAGATATTATCTGGCTTCAACGGGACTTCGGCATATATGTCTGCAATCTCTTTGACACAGGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctcttaattcaacttatttgtctcattctgttgacatttatgggttaattagGTCATGCATGGTGCGGATCGAGATATTGCATGGCTTCAACGAGACTTTGGAATTTACATTTGTAATTTGTTTGACACTCACCAG
                               tgttgac  putative branch site (score: 3)
      ttaattcaacttattt  TA-rich tract