Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttcttgaaaaaaaaaacttatataaaagtatttattttaaaattactttaaattttaaatttaaataaactcaccctaaactatgtcaattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTACTAGAGCTTGTGAAGATTGGAG

Basic information

species Glycine max
transcript GLYMA17G18800.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G18800.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0031g00350.t01 (Vitis vinifera), 3'ss of exon 4
tgtttcttgaaaaaaaaaacttatataaaagtatttattttaaaattactttaaattttaaatttaaataaactcac----cctaaactatgtcaattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTACTAGAGCTTGTGAAGATTGGAG
       | |  | || ||      ||         | |  || ||| ||  |    | |  | | || | | |        | ||| |||  | |  ||||||| |||  |  | ||| | || |||||  |||||||||| ||||| |||||||| ||| ||||||||||||| ||| |  | || || || ||| ||||||
------gtaagtacaataatgcccctag-----cccactccaatatt-ctccatgcctca--tctgaacagaattgtaatttcaaaattatcaccaaattgcagGGAAAGTATCATGGGACATTCGATTTTATTTTCGTGGACGCTGACAAGGACAACTACCTGAACTACCACAAAAGGCTGATTGATCTGGTCAAGGTTGGAG

upper sequence: GLYMA17G18800.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ22516 (Selaginella moellendorffii), 3'ss of exon 4
tgtttcttgaaaaaaaaaacttatataaaagtatttattttaaaattactttaaattttaaatttaaataaactcaccctaaactatgtcaattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTACTAGAGCTTGTGAAGATTGGAG
                            |||  || | |  ||  || |||||  | |||  || ||  ||   ||      ||  | ||    | ||||||    ||  | ||  | || || ||| | || ||||||||||| |||||||||||||||||||||||||||||| |  |     | || ||  | ||||
--------------------------gtaagctttcaatacaacttttcttta--tcttaccttgaaccaacgacaatgctgacactttc---ctcgcagGAGGCGAATCATGGCGCATTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG

upper sequence: GLYMA17G18800.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ11728 (Selaginella moellendorffii), 3'ss of exon 4
tgtttcttgaaaaaaaaaacttatataaaagtatttattttaaaattactttaaattttaaatttaaataaactcaccctaaactatgtcaattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTACTAGAGCTTGTGAAGATTGGAG
                            |||  || | |  ||  || |||||  | |||  || ||  ||   ||      ||  | ||    | ||||||    ||  | ||  |||| || ||| | || ||||||||||| |||||||||||||||||||||||||||||| |  |     | || ||  | ||||
--------------------------gtaagctttcaatacaacttttcttta--tcttaccttgaaccaacgacaatgctgacactttc---ctcgcagGAGGCGAATCATGGCGCGTTCGACTTCATCTTTGTGGATGCTGACAAGGACAATTACTTGAACTACCACAAGAGGTTGATCTCTTTGGTTAAAGTCGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664754|gb|BI702125.1|BI702125
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAGGGGGTCG
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCG
EST: gi|192331916|gb|FK026700.1|FK026700
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|58024519|gb|CX711260.1|CX711260
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|31305901|gb|CD391104.1|CD391104
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|151396856|gb|EV266729.1|EV266729
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|11690188|gb|BF597864.1|BF597864
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTANAGAT                         GAAAATAAAAAGGGGTCGTTGGANTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|14125214|gb|BG789661.1|BG789661
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|16996333|gb|BM085705.1|BM085705
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|192331915|gb|FK026699.1|FK026699
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|9565068|gb|BE474577.1|BE474577
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTANAGAT                         GANAATAAAAAGGGGTCGTTGGGATT-CGTTTTCGTGGATGCTGATAAAGA
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGG-ATTTCGTTTTCGTGGATGCTGATAAGGA
EST: gi|12489965|gb|BG043486.1|BG043486
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|19052685|gb|BM731352.1|BM731352
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|7326739|gb|AW620537.1|AW620537
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|6073074|gb|AW102461.1|AW102461
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|21285555|gb|BQ473426.1|BQ473426
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|10233953|gb|BE802841.1|BE802841
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|13125541|gb|BG316111.1|BG316111
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCT
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCT
EST: gi|10233011|gb|BE801899.1|BE801899
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|9902340|gb|BE611308.1|BE611308
EST:     TTCAGAGAAGGACCTGCTCTCTC-GTTTCTTGACGAGGATGCT-AAAGAT                         GAAAATAAAAAGGGGTCGTGGGAT
genomic: TTCAGAGAAGGACCTGCTCT-TCCGTTTCTTGACGAG-ATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGAT
EST: gi|192299019|gb|FG992825.1|FG992825
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGACTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|6719304|gb|AW306951.1|AW306951
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTGTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|19053948|gb|BM732615.1|BM732615
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|37995048|gb|CF806637.1|CF806637
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|308098954|gb|HO760795.1|HO760795
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|10234308|gb|BE803196.1|BE803196
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATATCGTTNTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|12688692|gb|BG155028.1|BG155028
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|15815899|gb|BI788174.1|BI788174
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|13790564|gb|BG653155.1|BG653155
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|31561252|gb|CD487090.1|CD487090
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATGAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|192299084|gb|FG992860.1|FG992860
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|151393265|gb|EV263140.1|EV263140
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|192299085|gb|FG992861.1|FG992861
EST:     ATTTCAGAGAAGGACCTGCTTTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|15816093|gb|BI788368.1|BI788368
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|31462813|gb|CD404841.1|CD404841
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GGAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|11411713|gb|BF423783.1|BF423783
EST:     TTTCAGAGAAGGACCTGCTCTTCTCGTT-CTTGACGAGATGCTTAAAGAT                         GAAAANTAAAACGTG-TCGGTGGATTTCGCTCTCGTGGATGCTGAT
genomic: TTTCAGAGAAGGACCTGCTCTTC-CGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAA-TAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGAT
EST: gi|7686708|gb|AW757356.1|AW757356
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATNTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|15001155|gb|BI321969.1|BI321969
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGAT
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGAT
EST: gi|192306106|gb|FG993682.1|FG993682
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|208329022|gb|GE131188.1|GE131188
EST:     ATTTCAGANAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|19269468|gb|BM885724.1|BM885724
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|192295646|gb|FG990500.1|FG990500
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGA
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGG-TCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGA
EST: gi|151397016|gb|EV266889.1|EV266889
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|9204758|gb|BE330982.1|BE330982
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|15337479|gb|BI498135.1|BI498135
EST:     AATTCAGAGAAGGACCTGCTCTT-CGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCG-TGGATTTCGTTTTCGTGGATGCTGATAGGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|16106335|gb|BI894075.1|BI894075
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|14008595|gb|BG725199.1|BG725199
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCT
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCT
EST: gi|207695755|gb|GD677600.1|GD677600
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
EST: gi|308098846|gb|HO760687.1|HO760687
EST:     ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGAT                         GAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC
genomic: ATTTCAGAGAAGGACCTGCTCTTCCGTTTCTTGACGAGATGCTTAAAGATgtgggtgcac ... aattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactttaaattttaaatttaaataaactcaccctaaactatgtcaattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTACTAGAGCTTGTGAAGATTGGAG
     ttaaattttaaattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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tgtttcttgaaaaaaaaaacttatataaaagtatttattttaaaattactttaaattttaaatttaaataaactcaccctaaactatgtcaattttgcagGAAAATAAAAAGGGGTCGTTGGATTTCGTTTTCGTGGATGCTGATAAGGACAATTACTTGAACTACCACAAGAGGGTACTAGAGCTTGTGAAGATTGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG