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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgtcacatctattgtttacaatgattgctatgcagctagtgctgttataacattcaccctttacagGTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTTATGTCTTCTAAAG

Basic information

species Glycine max
transcript GLYMA17G16630.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16630.3 (Glycine max), 3'ss of exon 5
lower sequence: AT5G46630.2 (Arabidopsis thaliana), 3'ss of exon 5
------gtagtgtcacatctattgtttacaatgattg-ctatgcagc----tagtgctgttata--acattcaccctt-tacagGTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
      || | ||  | |    ||| ||    ||| | ||| |  |     ||||| || |||    ||||| | |     ||||| || ||||||||||||||||||||||| ||||| ||||| |||||||
gtgagtgttgagtttctttctgtgtgtatgtagatcggctaggttgtgcggtagtgatgatattttgcattctctcaaacgcagGTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTCTAAAG

upper sequence: GLYMA17G16630.3 (Glycine max), 3'ss of exon 5
lower sequence: PP1S54_156V6.1 (Physcomitrella patens), 3'ss of exon 5
-----------------------------------------------------------------gtagtgtcacatctattgtttacaatgattgctatgcagctagtgctgttataacattcaccctt-----tacagGTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
                                                                 | | |     || ||| | ||  | ||| ||      || | ||| |  |  |  |||     ||     | |||||||| || ||||||||||||||||| ||||| || ||||||   ||||
gtacatatgtttaaaggagaacgtagtttcgcttcttaagaagcattgggattaactctatcttagaaattctgaatttatcggtttaactgaatg----aaagtttgtggtactcaagaatttgttgttggttgtgcagGTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG

upper sequence: GLYMA17G16630.3 (Glycine max), 3'ss of exon 5
lower sequence: PP1S197_28V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------------------gtagtgtcacat---ctattgtttacaatgattgctatgcagctagtgct-gttataacattcac-cctttacagGTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
                              |  ||  | |||    ||||| ||| | ||  |   |   |  |||| ||    |||  |||    ||| | |||||||| || |||||||||||||| || |||||||| ||||||   || |
gtacacttataatgaaaacagaatgtttgaggtgtacctcatgctttattggttatactgtgtaaaa-atatgtagtactcaacatattattgttgcctatgcagGTCTTTCTCGATATTGTGGAAAGCGTTAATCTTCTCATGTCTCAGAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttacaatgattgctatgcagctagtgctgttataacattcaccctttacagGTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTTATGTCTTCTAAAG
                                 ttataac  putative branch site (score: 2)
                                         ttcacccttt  CT-rich tract
                                 ttataacatt  TA-rich tract