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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtgttgtgctacttgcttttgcgttttcatttgatttgtgtttgttgtatgaaattataaagatttgttgtgcaattggtattgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGTATGTTTCTCCACCTCAACCACCGTCTCCAGTCCCAGAAGGTTCGGAGG

Basic information

species Glycine max
transcript GLYMA17G15010.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G15010.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0154g00500.t01 (Vitis vinifera), 3'ss of exon 4
gtatatgtgttgtgctacttgcttttgcgttttcatttgatttgtgtttgttgtatgaaattataaagatttgttgtgcaattggtattgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGTATGTTTCTCCACCTCAACCACCGTCTCCAGTCCCAGAAGGTTCGGAGG
                    |   || | || |   |||    || |    |||   | ||| |||   |||||||   || |||    ||| | ||||| || |||||  | || ||| | |||||||| ||||| |||| |||| | ||||||||||| ||||||||||| || ||||| || ||||| || || |
--------------------gtaattacattgttggttgtgaggtttagactgtgc-agattgtaa---tttgttg---aagtgg----gttttgtagTTTAATAAGGATTCGGGTCATATTGTTGAGGAATGCAAGTTGAAAGTGGTTTATGTTTCTCCCCCTCAACCACCATCACCAGTTCCTGAAGGATCAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193525054|gb|FK480167.1|FK480167
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGG
EST: gi|151393590|gb|EV263465.1|EV263465
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|15204339|gb|BI427107.1|BI427107
EST:     GTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|151400266|gb|EV270080.1|EV270080
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TCCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|192308379|gb|FK000903.1|FK000903
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|192320145|gb|FK012633.1|FK012633
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|6914978|gb|AW396508.1|AW396508
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|298168811|gb|HO009741.1|HO009741
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|10236074|gb|BE805022.1|BE805022
EST:     CCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: CCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
EST: gi|18721259|gb|BM523334.1|BM523334
EST:     GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATG                         TTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG
genomic: GTGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGgtatatgtgt ... tgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttgttgtatgaaattataaagatttgttgtgcaattggtattgttgtctagTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGTATGTTTCTCCACCTCAACCACCGTCTCCAGTCCCAGAAGGTTCGGAGG
       ttgtatgaaattataa  TA-rich tract