Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagcttggttacttgtgaataagatatctgcctctcattcgttatatttttatcttggtccattgtcattaaaccctatctcatcaaactatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCAAATAAATTCCAGACAAG

Basic information

species Glycine max
transcript GLYMA17G13860.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182828|gb|HO031563.1|HO031563
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
EST: gi|193426792|gb|FK392577.1|FK392577
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAA-GGTTTTGGAA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAA
EST: gi|298176512|gb|HO023099.1|HO023099
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
EST: gi|193355938|gb|FK322609.1|FK322609
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTAGAAAAGGGTTTGGAAAGAG
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCT-GAAAAGGGTTTGGAAAGAG
EST: gi|192332051|gb|FK024553.1|FK024553
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
EST: gi|31463851|gb|CD405879.1|CD405879
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
EST: gi|298190558|gb|HO032679.1|HO032679
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
EST: gi|26059006|gb|CA801920.1|CA801920
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
EST: gi|23728979|gb|BU762566.1|BU762566
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
EST: gi|298171053|gb|HO016085.1|HO016085
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
EST: gi|298199502|gb|HO042865.1|HO042865
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
EST: gi|6341893|gb|AW164717.1|AW164717
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
EST: gi|23728866|gb|BU762504.1|BU762504
EST:     CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAG                         GAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA
genomic: CAAAAGGGTGATTCCAGCTCAAAGGATGGATCCGATGGTTCAAGAAAGAGgtattattcc ... tatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttttatcttggtccattgtcattaaaccctatctcatcaaactatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCAAATAAATTCCAGACAAG
                                      atcaaactatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agagcttggttacttgtgaataagatatctgcctctcattcgttatatttttatcttggtccattgtcattaaaccctatctcatcaaactatttatcagGAATGCTGAAAAGGGTTTGGAAAGAGCATCAGCCAAGAAAACAAATAATCAAATAAATTCCAGACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-gagcttg
- - - - - -acttgtg
- - - - - - - - - - - - - - -tgcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctatc