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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcctgctattcttatagcaattgtactttattcttgtaactatatccctattttacaatatcctatcttcaaaatgggtatcctccctaacacaagtagATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACCACCAGGAAGTGTGTCCAATCATTCAG

Basic information

species Glycine max
transcript GLYMA17G11440.3
intron # 4
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11440.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0118g00660.t01 (Vitis vinifera), 3'ss of exon 3
-ttcctgctattcttatagcaattgtactttattcttgtaactatatccctattttacaatatcctatcttcaaaatgggtatcctccctaacacaagt-agATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACCACCAGGAAGTGTGTCCAATCATTCAG
 |   || |       |  | ||| || |   |||||||   | || |  |    || | |||   ||     ||||| || || | | ||| |  ||| ||||||||||||||||||||| ||||||||||||   || ||||| | || |||| || | |   ||      ||||| ||||
ctcattgttcactccttttctattctagtcacttcttgtttat-taactttgagcta-attatttaattggggaaatgagtttcttacttaatatgagttagATGTTGAAGATGGTCACACTTTGCATCTGGTTACCAGACAACCAGTTCCACCATCATCTGAGGGTTCACATAATCAATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213616929|gb|DB959241.1|DB959241
EST:     AATTTGCCAAGGAAAAGTTCTAAAGGATGATCAGCTCCTGTCTGCCTATC                         ATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTAC
genomic: AATTTGCCAAGGAAAAGTTCTAAAGGATGATCAGCTCCTGTCTGCCTATCgtatcctgtc ... acacaagtagATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccctattttacaatatcctatcttcaaaatgggtatcctccctaacacaagtagATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACCACCAGGAAGTGTGTCCAATCATTCAG
                                      ctccctaac  putative branch site 
     attttacaatat  TA-rich tract