Sequence
atgc intronic sequence ATGC exonic sequencegtacatggtttacttgccttttgtactttgataataatttttggaataaccagaacatgatgactaacttttgatgcttgacagGCGTCGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACGAACCTGCGGAGAGTGACTTACCTTGTCTTAGATGAAGC
Basic information
species | Glycine max |
transcript | GLYMA17G09270.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G09270.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G63120.1 (Arabidopsis thaliana), 3'ss of exon 4
gtacatggtttacttgccttttgtactttgataataatttttggaataacca--gaacatgatgactaacttttgatgcttgacagGCGTCGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACGAACCTGCGGAGAGTGACTTACCTTGTCTTAGATGAAGC
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gtattttattttttaatagtgtagttttcatgtctggttcttggatggaacatcaaagtttatgaatcatgattg--gcttgtcagGTGTTGAGATTGTAATTGCTACACCTGGTCGTTTGATTGATATGTTGGAATGTCAACACACTAATTTGAAGAGAGTGACTTACCTTGTACTGGATGAGGC
upper sequence: GLYMA17G09270.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv17s0000g09130.t01 (Vitis vinifera), 3'ss of exon 4
gtacatggtttacttgccttttgtactttgataataatttttggaataa--ccagaacatgatgac--taacttttgatgct-tgacagGCGTCGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACGAACCTGCGGAGAGTGACTTACCTTGTCTTAGATGAAGC
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gtacttatgtttctt--ctatggctatttgctaaatccctataaatttaggttggtgcacgaaaatcttatctattgcccttatgctagGTGTTGAGATTGTCATTGCTACACCTGGACGATTAATAGATATGCTGGAGGCTCAACATACAAACCTGCGAAGAGTGACTTACCTTGTATTAGATGAGGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15814206|gb|BI786481.1|BI786481EST: CATCTATGGTGGTGCACCAAAGGGTCCCCAAATTCGGGAGCTTAAAAGAG GCGTCGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAG
genomic: CATCTATGGTGGTGCACCAAAGGGTCCCCAAATTCGGGAGCTTAAAAGAGgtacatggtt ... tgcttgacagGCGTCGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gataataatttttggaataaccagaacatgatgactaacttttgatgcttgacagGCGTCGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACGAACCTGCGGAGAGTGACTTACCTTGTCTTAGATGAAGC
taatttttggaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtacatggtttacttgccttttgtactttgataataatttttggaataaccagaacatgatgactaacttttgatgcttgacagGCGTCGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACGAACCTGCGGAGAGTGACTTACCTTGTCTTAGATGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC