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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcctacagtgcacaatcatatagtcctatggataaacttgtgtacaaaatattccaattcttatatgattattatgtgatctggttttgcagATGATACTGGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTACTCACTTCAGCAGGACCCCTTGGGAATGTGCAGTCTGAGGTCTTATTCCGAAAGGA

Basic information

species Glycine max
transcript GLYMA17G08830.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G08830.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv17s0000g05070.t01 (Vitis vinifera), 3'ss of exon 5
---------------------gtaagtcctacagtgc-acaatcatatagtcctatggataaact-tgtgta-caaaatattccaattcttatatg--attattatgtgatctggttttgcagATGATACTGGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTACTCACTTCAGCAGGACCCCTTGGGAATGTGCAGTCTGAGGTCTTATTCCGAAAGGA
                      |  ||  | ||  |      ||    ||   | |  |||||     || | |      |   ||| || | ||    | | ||||   | ||||| | ||||||| ||||  ||| | |||||||||||||| ||||||||||| ||| ||  ||| || || ||||||||||||||||| ||| |  |||| ||||||||
gtacgtcatatcttctcaagatttggttttgcaaagttgttgtctgccagctttttaaataaaaaacatgcaactgttcgtcttaatcctaacatcttgtgaatatgaattttggttatacagATGACACTGCCATGTTATGGGGAGTCAAGTTTTACAATGATTTGCTCTCTCAAGCTGGTCCTCTTGGGAATGTGCAGTCAGAGCTACTATTTCGAAAGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtacaaaatattccaattcttatatgattattatgtgatctggttttgcagATGATACTGGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTACTCACTTCAGCAGGACCCCTTGGGAATGTGCAGTCTGAGGTCTTATTCCGAAAGGA
        aaaatattccaattct  TA-rich tract