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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctgttttattttgtttttttaatgatgcttaattctggtaaatccctgccttattccgccaatgattatttgcagATAGTTGGTGCCTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAGGCTTGCAGTGACATTAGGTGCAATAAAAATTTCCTATATT

Basic information

species Glycine max
transcript GLYMA17G08120.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G08120.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0037g00230.t01 (Vitis vinifera), 3'ss of exon 5
---------------gtaagtttctgttttattttgtttttttaatgatgcttaattctggtaaatccctgccttat-tccgcc-aatgattatttgcagATAGTTGGTGCCTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAGGCTTGCAGTGACATTAGG---TGCAATAAAAATTTCCTATATT
                |   |     ||  | | | | || |   ||    | ||       ||  | |    |||| || ||  ||||| |  |||||||||||||| || || ||||||||  ||||| | ||||| ||||| ||||||||||||| ||||||   | | |   |    ||||| | | ||||| | |   
tctatattacccctttttgttaggcattgaaatatatcttgtgtttgcctatcaaaaaaaaaaaggcacacatttatgtctgctgaatgaatccttgcagATAGTTGGGGCTTTCTGGTACTTACTAGCTGTAGAACGTAATGATTCATGCTGGCAGAGGGCTTGTGCTCATAGCGGAAATTGCAAGACAGATTTCTTGT---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgatgcttaattctggtaaatccctgccttattccgccaatgattatttgcagATAGTTGGTGCCTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAGGCTTGCAGTGACATTAGGTGCAATAAAAATTTCCTATATT
                                        aatgattattt  TA-rich tract