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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgcctcaaaggcaaagcttcattaatttcatactcattgttggttcagtattgtgcttgccttttatattctaatgtacttttcttttatcaccacagATGAATTGTGCTCACCTGGAAAATTGTTTGCATGAGGCAAGAGAGGAAGCTCAGACACAAAAAAGTTCTGCTGACAGGAGGGCCTCGGAATATAGTTTAC

Basic information

species Glycine max
transcript GLYMA17G07920.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07920.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G143445_T01 (Zea mays), 3'ss of exon 2
-tttgcctcaaaggcaaagcttcattaatttca-tactcattgttggtt-cagtattgtgcttgccttttatattc--taatgtacttttcttttatcac-------cacagATGAATTGTGCTCACCTGGAAAATTGTTTGCATGAGGCAAGAGAGGAAGCTCAGACACAAAAAAGTTCTGCTGACAGGAGGGCCTCGGAATATAGTTTAC
 || | |  |||    || ||    ||| | || | |||  ||    |  || |  |   ||| | | |||| |     |||||  || ||  |   ||          |||||||||||||| ||||| ||||| ||||| ||||| |||||||| || || |  ||| | ||| |||| |||||||| |||||    || |||  |   |
gttagtcataaa----aatctatgataactccactgctctgtgcaaatcgcaatgatcaccttccatattatttctgtgaatgtgattctccctctacatattttgatgcagATGAATTGTGCGCACCTTGAAAACTGTTTACATGAAGCAAGAGAAGAGGCCCGAACAAACAAATGTTCAGCTGACAGAAGGGCTGTTGAGTATGATGCTC

upper sequence: GLYMA17G07920.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0037g00730.t01 (Vitis vinifera), 3'ss of exon 3
tttgcctcaaaggcaaagcttcattaatttcatactcattgttggttcagtattgtgcttgccttttatattctaatgtacttttc--ttttatcaccacagATGAATTGTGCTCACCTGGAAAATTGTTTGCATGAGGCAAGAGAGGAAGCTCAGACACAAAAAAGTTCTGCTGACAGGAGGGCCTCGGAATATAGTTTAC
 ||| ||    ||||    |   || |||| ||  |||  |     |  | ||| ||  |   ||  |  ||||  | |   | |      | |    ||||||||||||||||||| |||| |||||| | ||||| |||||||||||||||||||| ||     || |||||||| ||||||||||||| ||||||  | 
cttgtcttt--ggcagcattagtttgattttatcatcacagacatgtttgaattctgacttttttccactttctcttctctctgtggacactctgttaacagATGAATTGTGCTCACTTGGAGAATTGTCTACATGAAGCAAGAGAGGAAGCTCAGACTCACCTCTGTGCTGCTGACCGGAGGGCCTCGGAGTATAGTGCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagtattgtgcttgccttttatattctaatgtacttttcttttatcaccacagATGAATTGTGCTCACCTGGAAAATTGTTTGCATGAGGCAAGAGAGGAAGCTCAGACACAAAAAAGTTCTGCTGACAGGAGGGCCTCGGAATATAGTTTAC
                         ttctaat  putative branch site (score: 2)
                                   cttttcttttatcacc  putative PPT
                  ttttatattctaatgt  TA-rich tract