1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaggaataatacccttggttgttttaaaattgggaattgtagtcctttctgttgcattagacatttggtgtgtctttttcagGATTGCTGTCTACAAGGCAATTTATAGACTGTTTGGAGGGTTTGTTGCAGATGTAGTTGCTGCAATTGATCAG
species | Glycine max |
transcript | GLYMA17G06740.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAATGGCCATGAATTCGGGAGAGCGAGTGGGATGGCTCCTCGTGCTAG GATTGCTGTCTACAAGGCAATTTATAGACTGTTTGGAGG-TTTGTTGCAGAEST: gi|193395849|gb|FK364432.1|FK364432
genomic: ATGAATGGCCATGAATTCGGGAGAGCGAGTGGGATGGCTCCTCGTGCTAGgtaaggaata ... tctttttcagGATTGCTGTCTACAAGGCAATTTATAGACTGTTTGGAGGGTTTGTTGCAGA
EST: ATGAATGGCCATGAATTCGGGAGAGCGAGTGGGATGGCTCCTCGTGCTAG GATTGCTGTCTACAAGGCAATTTATAGACTGTTTGGAGGGTTTGTTGCAGAEST: gi|11687666|gb|BF595342.1|BF595342
genomic: ATGAATGGCCATGAATTCGGGAGAGCGAGTGGGATGGCTCCTCGTGCTAGgtaaggaata ... tctttttcagGATTGCTGTCTACAAGGCAATTTATAGACTGTTTGGAGGGTTTGTTGCAGA
EST: ATGAATGGCCATGAATTCGGGAGAGCGAGTGGGATGGCTCCTCGTGCTAN GATTGCTGTCTACCAGGCCATTTATAGACTGGTTGGAAGGTTTGTTGCAGA
genomic: ATGAATGGCCATGAATTCGGGAGAGCGAGTGGGATGGCTCCTCGTGCTAGgtaaggaata ... tctttttcagGATTGCTGTCTACAAGGCAATTTATAGACTGTTTGGAGGGTTTGTTGCAGA
aattgggaattgtagtcctttctgttgcattagacatttggtgtgtctttttcagGATTGCTGTCTACAAGGCAATTTATAGACTGTTTGGAGGGTTTGTTGCAGATGTAGTTGCTGCAATTGATCAG
tgtctttttc CT-rich tract
aattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaataatacccttggttgttttaaaattgggaattgtagtcctttctgttgcattagacatttggtgtgtctttttcagGATTGCTGTCTACAAGGCAATTTATAGACTGTTTGGAGGGTTTGTTGCAGATGTAGTTGCTGCAATTGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC