1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttgcttcttacgaagagttgtggtgccacatacttataattgtatttcttctttgacatgtcatttctgcattattgtttccttattggaacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAGAGGTACTGGATGAAGAAGATGACGAGGAGCATGAGGAGACCTTGTGTG
species | Glycine max |
transcript | GLYMA17G05940.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTAACAAATCAAAATCTGGTTCAAAAGGG CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAEST: gi|192312491|gb|FK003227.1|FK003227
genomic: CAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
EST: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGG CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAEST: gi|26048084|gb|CA784679.1|CA784679
genomic: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
EST: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGG CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAEST: gi|192312490|gb|FK003226.1|FK003226
genomic: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
EST: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGG CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAEST: gi|193357066|gb|FK319646.1|FK319646
genomic: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
EST: TCCATTTTCAAACCAACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGG CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAEST: gi|6846794|gb|AW349084.1|AW349084
genomic: TCCA-TTTCAAACC-ACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
EST: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGG CGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
genomic: CATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGgtaaaaatat ... aacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAA
tttcttctttgacatgtcatttctgcattattgtttccttattggaacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAGAGGTACTGGATGAAGAAGATGACGAGGAGCATGAGGAGACCTTGTGTG
ctttgac putative branch site (score: 4)
attattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgcttcttacgaagagttgtggtgccacatacttataattgtatttcttctttgacatgtcatttctgcattattgtttccttattggaacaaaacagCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAGAGGTACTGGATGAAGAAGATGACGAGGAGCATGAGGAGACCTTGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA