1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctaatcaaatatatcatttaaaaattgtggtggctctggattctctcctttttattatctatgagttacttaataagctcatatttatcaaaattgcagACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTTGTTAGGATTGATGAAGTGCTTTCCAGCCTTAAAGGAAAGCCATCGGAAG
species | Glycine max |
transcript | GLYMA17G04230.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTAT-GGGG--- ACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTTEST: gi|193422220|gb|FK389679.1|FK389679
genomic: TTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGGGTAAgttgattaag ... aaaattgcagACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTT
EST: TTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGG--AA -CAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTTEST: gi|254323158|gb|GR835766.1|GR835766
genomic: TTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGGGTAAgttgattaag ... aaaattgcagACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTT
EST: TTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTAT-GGGG--- ACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTTEST: gi|254323159|gb|GR835767.1|GR835767
genomic: TTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGGGTAAgttgattaag ... aaaattgcagACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTT
EST: TTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTAT-GGGG--- ACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTTEST: gi|193344416|gb|FK311168.1|FK311168
genomic: TTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGGGTAAgttgattaag ... aaaattgcagACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTT
EST: TTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGG--A- -CAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTT
genomic: TTATAGTTTGATTTCTTTGAAGACAATTGCAATTTGCATTATGGGGGTAAgttgattaag ... aaaattgcagACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTT
ctcctttttattatctatgagttacttaataagctcatatttatcaaaattgcagACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTTGTTAGGATTGATGAAGTGCTTTCCAGCCTTAAAGGAAAGCCATCGGAAG
acttaat putative branch site (score: 4)
ttttattatctatgag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaatcaaatatatcatttaaaaattgtggtggctctggattctctcctttttattatctatgagttacttaataagctcatatttatcaaaattgcagACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTTGTTAGGATTGATGAAGTGCTTTCCAGCCTTAAAGGAAAGCCATCGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA