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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaatcatatgaaatgagaaaattatttttatgtggatcaaactaattctttttcatttcctctgctctttctctgtgatagGTCTGAATTTGGTCTCATCTTGGCTTACTTTTATTTGTGCGACCGCACAGATTTCTTTGCCTCATCCAAAAAG

Basic information

species Glycine max
transcript GLYMA17G04070.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405341|gb|EV275155.1|EV275155
EST:     TTGATGGATGAGTATTTCCTTCTTGAGAACCGTTTAACACTTAGAGCGAT                         GTCTGAATTTGGTCTCATCTTGGCTTACTTTTATTTGTGCGACCGCACAGA
genomic: TTGATGGATGAGTATTTCCTTCTTGAGAACCGTTTAACACTTAGAGCGATgtaagtaaat ... tctgtgatagGTCTGAATTTGGTCTCATCTTGGCTTACTTTTATTTGTGCGACCGCACAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgtggatcaaactaattctttttcatttcctctgctctttctctgtgatagGTCTGAATTTGGTCTCATCTTGGCTTACTTTTATTTGTGCGACCGCACAGATTTCTTTGCCTCATCCAAAAAG
             aactaat  putative branch site (score: 2)
               ctaattctttttcatt  CT-rich tract
                taattctttttcattt  TA-rich tract