1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcttcattcttcctgcttgttcagtatcataattccctactattgtggtaattctattttgtttttatcttttttactgataatttaaattttattgtagGTGAGAGTAGATCCTAGAAATAAGGAGGTCAATCTTGATAGTTCACTGTACGAGAAAATTCCCGACCTAACCGAGGAAGATATGAAAAGACAAGAAGGAG
species | Glycine max |
transcript | GLYMA17G03870.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tggtaattctattttgtttttatcttttttactgataatttaaattttattgtagGTGAGAGTAGATCCTAGAAATAAGGAGGTCAATCTTGATAGTTCACTGTACGAGAAAATTCCCGACCTAACCGAGGAAGATATGAAAAGACAAGAAGGAG
tactgat putative branch site (score: 2)
ttttatt putative PPT
tattttgtttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttcattcttcctgcttgttcagtatcataattccctactattgtggtaattctattttgtttttatcttttttactgataatttaaattttattgtagGTGAGAGTAGATCCTAGAAATAAGGAGGTCAATCTTGATAGTTCACTGTACGAGAAAATTCCCGACCTAACCGAGGAAGATATGAAAAGACAAGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - ttcttcc
- - - - - - -tgcttgt
- - - - - - - - - - - - - - - - - ccctact
- - - - - - - - - - - - - - - - - - - - - -tgtggta