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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatgtttgaatgcatctgtagctgtacaactttttaattttactgaactgaaaattaattctctgaaattccagGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTAGTGCTCAGCCAAGGTGCCCTCGTCCCACTGTTGGCCCAGTTGAATG

Basic information

species Glycine max
transcript GLYMA17G03430.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G03430.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 4
-------------------gtatgttatgtttgaatgcatctgtagctgtacaactttttaattttac-tgaactgaaaatt--------aattctctg--aaattccagGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTAGTGCTCAGCCAAGGTGCCCTCGTCCCACTGTTGGCCCAGTTGAATG
                    |       |||| ||     | |    | ||  | || ||    | || |  | |  |  ||        ||| || |   ||| |  |||| || ||||||||||||||||||||||||||||| || || ||  | ||||| || ||  | || || ||| |  | ||| || | || ||||||||||
gtgcttatttgaaatttgtttgaagcccgttttaagattgcagactgtatatcatttattggcataacatagattcgaggttttatatgaaatcctttaccaaaatgtagGCTGTCTGGGCTTTGGGAAATGTTGCTGGTGACTCACCCAGATGCCGTGATCTTGTCCTTGGTCATGGGGCCTTGATTCCATTGCTAGCACAGTTGAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724999|gb|BW659745.1|BW659745
EST:     CTATATTTGTCAAGCTACTTAGTTCACCTAGTGATGATGTTCGGGAGCAG                         GCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGAT
genomic: CTATATTTGTCAAGCTACTTAGTTCACCTAGTGATGATGTTCGGGAGCAGgtatgttatg ... gaaattccagGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgtacaactttttaattttactgaactgaaaattaattctctgaaattccagGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTAGAGATCTAGTGCTCAGCCAAGGTGCCCTCGTCCCACTGTTGGCCCAGTTGAATG
                                 aattaat  putative branch site (score: 3)
                                       ttctctg  CT-rich tract
           tttttaattttactga  TA-rich tract