1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttattctatggtgttatgtgtgttttatctatatttgctctgcaattcagtcatattgatctgtcgttgatgcttttaattgtgaattcttcttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA
species | Glycine max |
transcript | GLYMA17G03010.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACTGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAAG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|193542105|gb|FK496217.1|FK496217
genomic: CACTGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAAGgtaacatgct ... ttcttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: CACTGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAAG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|193315499|gb|FK280207.1|FK280207
genomic: CACTGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAAGgtaacatgct ... ttcttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: CACTGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAAG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCEST: gi|208304240|gb|GE104769.1|GE104769
genomic: CACTGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAAGgtaacatgct ... ttcttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
EST: ACTGAAGTTTCTGAACTGTCTATTTTTTCAATACCTTTTTCTACAAAAAG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTEST: gi|193447403|gb|FK414606.1|FK414606
genomic: ACTGAAGTTTCTGAACTGTC-ATTTTTTCAATACCTTTTTCTACAAAAAGgtaacatgct ... ttcttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGT
EST: CACTGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAAG TTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
genomic: CACTGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAAAAGgtaacatgct ... ttcttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACC
attcagtcatattgatctgtcgttgatgcttttaattgtgaattcttcttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA
ttttaat putative branch site (score: 3)
ttcttcttacc putative PPT
ttttaattgtgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattctatggtgttatgtgtgttttatctatatttgctctgcaattcagtcatattgatctgtcgttgatgcttttaattgtgaattcttcttaccagTTAATAAGTGGCAAGAATGGGTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAATTGGGATATGGCCTACATGAATGTGATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -tatggtg
- - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - ctctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaattc