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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtcctccatttcgtatgaactgctcactcaagttatatgtacattcattgaagctgttaagcaattggtgcagGCTCCTGCCACAAACCCTGTACTTCCATCTAGCAATACGTCTAATGCTGGTTCAACACAGTTTTATGGGATAAGCCAGCTTCCTTCATCACCAGCTACTT

Basic information

species Glycine max
transcript GLYMA17G02720.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207731858|gb|GD707611.1|GD707611
EST:     TGGTAGTGTCCCCTGCCATGGTCCCTTTTTCAGGCTGGAGTCCTTATCAG                         GCTCCTGCCACAAACCCTGTACTTCCATCTAGCAATACGTCTAATGCTGGT
genomic: TGGTAGTGTCCCCTGCCATGGTCCCTTTTTCAGGCTGGAGTCCTTATCAGgtaggtcctc ... attggtgcagGCTCCTGCCACAAACCCTGTACTTCCATCTAGCAATACGTCTAATGCTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgctcactcaagttatatgtacattcattgaagctgttaagcaattggtgcagGCTCCTGCCACAAACCCTGTACTTCCATCTAGCAATACGTCTAATGCTGGTTCAACACAGTTTTATGGGATAAGCCAGCTTCCTTCATCACCAGCTACTT
  tgctcac  putative branch site (score: 2)
           aagttatat  TA-rich tract