1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttatccttgaagatattacaatggtgtactttatctggaaaacattaggttgtgattctttctacttactatcttatatgttatgtttctatattggaagGCTAGGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAA
species | Glycine max |
transcript | GLYMA17G00490.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
taggttgtgattctttctacttactatcttatatgttatgtttctatattggaagGCTAGGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAA
tacttac putative branch site (score: 1)
tttctat putative PPT
ttatatgttatgtttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatccttgaagatattacaatggtgtactttatctggaaaacattaggttgtgattctttctacttactatcttatatgttatgtttctatattggaagGCTAGGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAA
- - ccttgaa
- - - - - - - - - -aatggtg
- - - - - - - - - - - - - - - - - - ggaaaac
- - - - - - - - - - - - - - - - - - - - - - - -ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttatg