Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctattttcatcctaaaatcattggcattgcaaatgtttattgttgttgtagagtattcatactgtgtatctgacttctagaataagctgcttgtactgctattagcttatatatgcgagcttttagcccctttcaatcataaaaaaagaagaagcttatatatgctcattttattattttaatgtttcagGCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTC

Basic information

species Glycine max
transcript GLYMA17G00470.4
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00470.4 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 5
gtgagtctattttcatcctaaaatcattggcattgcaaatgtttattgttgttgtagagtattcatactgtgtatctgactt-ctagaataagctgcttgt-actgct-attagcttatatatgcgagcttttagcccctttcaatcataaaaaaagaagaagcttatatatgctcattttattattttaatgtttcagGCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTC
                  ||| ||  ||    || |   || || || |  || |  | | ||  |    |   ||| | ||  |    |    || |  | |||||  || |   |||| |  | ||  ||  |   |||||  |  |  | ||  | |   ||||| |||   |    | || ||||    |  |||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    | |||| |   |||||  ||||||| |    ||| ||||| |
-----------------gtaagat--tttctgttccggttgatttttttccttatttaatttttgtttatttactcttatttgtttctgtggtgtgttcatcactgcccataaatgtataaaaacaagtgtt--gttgctttc--ttgtggacaattagg---cttat-tatctcctgcctcttgtttt----tcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699367|gb|BW664086.1|BW664086
EST:     CCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAATAT                         GCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAATATgtgagtctat ... aatgtttcagGCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|208029666|gb|GD832044.1|GD832044
EST:     CCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAATAT                         GCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAATATgtgagtctat ... aatgtttcagGCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|12773474|gb|BG238401.1|BG238401
EST:     CCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAATAT                         GCCCACATTGAACAAG-GGATTGATTTTTCATCATTGGAGATTGATGCTAA
genomic: CCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAATATgtgagtctat ... aatgtttcagGCCCACATTGAACA-GTGGATTGATTTTTCATCATTGGAGATTGATGCTAA
EST: gi|7795385|gb|AW780844.1|AW780844
EST:     CTTGATTGAATAT                         GCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: CTTGATTGAATATgtgagtctat ... aatgtttcagGCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
EST: gi|208268375|gb|GE067690.1|GE067690
EST:     TCTTCCTTGATTGAATAT                         GCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAAT
genomic: TCTTCCTTGATTGAATATgtgagtctat ... aatgtttcagGCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcataaaaaaagaagaagcttatatatgctcattttattattttaatgtttcagGCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTC
                                         ttttaat  putative branch site (score: 3)
                    ttatatatgctcattt  TA-rich tract