1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttgtgaagagaaaaattactttgctgaatttttatcatgatttaaaacttgtattatggttgagttgtaaaatttgggttgcccttgaatatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG
species | Glycine max |
transcript | GLYMA17G00250.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGEST: gi|151409763|gb|EV279571.1|EV279571
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGEST: gi|192326423|gb|FK015925.1|FK015925
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGEST: gi|298166707|gb|HO010146.1|HO010146
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGEST: gi|58022692|gb|CX709433.1|CX709433
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGEST: gi|4396313|gb|AI495310.1|AI495310
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGEST: gi|254326666|gb|GR832818.1|GR832818
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGEST: gi|298178229|gb|HO023964.1|HO023964
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: TTCAGTTATGGACCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGEST: gi|7795909|gb|AW781306.1|AW781306
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGEST: gi|298184274|gb|HO029487.1|HO029487
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
EST: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTG GAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
genomic: TTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGgtaggttcaa ... tatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTG
aaacttgtattatggttgagttgtaaaatttgggttgcccttgaatatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG
ttgtaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtgaagagaaaaattactttgctgaatttttatcatgatttaaaacttgtattatggttgagttgtaaaatttgggttgcccttgaatatatcgcagGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - -agaaaaa
- - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgag