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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacattcattaaaactaatttatttccttttttcttagaaaatgagaattagttgcatccacattgcttgctcttttgatttcagtatctgaaattacagcatgcctgttattctaatctaaattttatcgaatagGGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCGTTACTGATGCAACAACCTTAACACAGGCAA

Basic information

species Glycine max
transcript GLYMA16G33080.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33080.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os02g35630.1 (Oryza sativa), 3'ss of exon 3
gtatg-acattcattaaaact--aatttatttccttttttcttagaaaatgagaattagttgcatccacattgcttgctcttttgatttcagtatctgaaattacagcatgcctgttattcta-atctaaattttatcgaatagGGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCGTTACTGATGCAACAACCTTAACACAGGCAA
||| | |  | |    ||| |  || ||   |  |  | |  | | || ||  ||||| || | || |||   || | ||   | ||  |||     | | |  |||||   ||||| || |  ||      ||| |   | ||| || ||  |||||||||| ||| | ||||| |||||||||||||| |||||  || ||||||||||||| || ||||||    
gtaagcatttgcccccaaattcaaagttgaatgttgatgtaatgggaactgtcaattattt-cttctacaacactagatcaact-ataacagagagggcact--cagca---ctgtttttttggatactttgtttgtttcacagGTAAAACTCTACTTGCTAAGACATTAGCTCGCTTTGTGAATGTGCCATTTGTAATTGCTGATGCAACAACATTGACACAG----

upper sequence: GLYMA16G33080.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0089g01240.t01 (Vitis vinifera), 3'ss of exon 3
gtatgacattcattaaaactaatttatttccttttttcttagaaaatgagaattagttgcatcc---------acattgcttgctcttttgatttcagt-atctgaaattacagcat---gcctgttattctaatctaaattttatcgaa-tagGGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCGTTACTGATGCAACAACCTTAACACAGGCAA
||||       |||  |  | ||||   |    || |   | ||| |||  | | |  || ||          | ||   || |  | ||  ||   || ||  ||   | | | ||   | |    ||||||||  | |||   | |||  ||| || ||||||||||| |||||||| ||||| |||||||||||||| |||||| || |||||||||||||| | ||||||    
gtataggccctatttta--tgatttgagtttagttgtggcataaattgaacactggcagcttcagatctgaagatatctattacattatttcttagtgtgataagaggctgctgaatttagaccaccattctaatgcacattaacttgaaacagGAAAAACATTACTTGCAAAAACACTTGCTCGTTTTGTGAATGTGCCCTTTGTCATTGCTGATGCAACAACCCTTACACAG----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtatctgaaattacagcatgcctgttattctaatctaaattttatcgaatagGGAAGACATTACTTGCTAAAACACTGGCTCGATTTGTGAATGTGCCGTTTGTCGTTACTGATGCAACAACCTTAACACAGGCAA
                                          ttttatc  CT-rich tract
                           ttattctaatctaaat  TA-rich tract