Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattttatatatatattttaattgtgaatgtcttggttgctttgcatttgtttcatttatttctaaggctgatacaagatttatattcttatcaactgaattcatgcagTGAATGCTCAGAAGTTCATGTAGCCCAAACTGGTCACCACATTCGGGATTGTTCTGGCACTAATGGTCGGCAGCGTCGTAGTTCTCATGCATGGGTAAAG

Basic information

species Glycine max
transcript GLYMA16G33060.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G33060.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv15s0021g00370.t01 (Vitis vinifera), 3'ss of exon 4
-----gtagattttatatata-tattt-taat--tgtgaatgtcttggttgctttgcatttgtttcat-ttatttctaaggctgatacaagatttatattcttatcaactgaattcat---gcagTGAATGCTCAGAAGTTCATGTAGCCCAAACTGGTCACCACATTCGGGATTGTTCTGGCACTAATGGTCGGCAGCGTCGTAGTTCTCATGCATGGGTAAAG
      | |||||  |    | || || ||||  |||  |     ||     |     ||||  |||  ||||| | ||    |||       ||  |  || |     |  |||  |   ||||||| || |||||| |||||||||| |||| |||||||||||||| ||| ||  ||||  | |   ||  | |||||||  | |  ||  ||||||| |||
gtaacatggatttacttctcactacttgtaatgctgttgaaacaatgtcctgtccagttttgcatcaaattattgccaaattagatctttatcttgcaaactaaggtgttctatttcttctgcagTGAGTGTTCAGAAATTCATGTAGCACAAAGTGGTCACCACATTCAGGACTGCACTGGACCGAGCAGTGTGAAGCGTCGAGGCTTACACTCATGGGTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatttctaaggctgatacaagatttatattcttatcaactgaattcatgcagTGAATGCTCAGAAGTTCATGTAGCCCAAACTGGTCACCACATTCGGGATTGTTCTGGCACTAATGGTCGGCAGCGTCGTAGTTCTCATGCATGGGTAAAG
            ggctgat  putative branch site (score: 4)
                 atacaagatttatatt  TA-rich tract