1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgtaccatgttgatcttcatcctgctagctaataaccttactttaatattttttgttttctcttgtgtattcactaaattattatcatataaaatgcagGTGAAGGAGGAGAAATAAACGCTACACATTTACTTCTAGGAATATGGTCTCAAAAAGAATCAGCAGGTCAACAGATCTTGGCTACTCTAGGTTTCAATGA
species | Glycine max |
transcript | GLYMA16G32900.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCAGCCCAGAAAGCCCTTGATTGGGCAATTGAGGAAAAATTGAAGTCAG GTGAAGGAGGAGAAATAAACGCTACACATTTACTTCTAGGAATATGGTCTCEST: gi|192294928|gb|FG987596.1|FG987596
genomic: ACCAGCCCAGAAAGCCCTTGATTGGGCAATTGAGGAAAAATTGAAGTCAGgtatgcatgg ... taaaatgcagGTGAAGGAGGAGAAATAAACGCTACACATTTACTTCTAGGAATATGGTCTC
EST: ACCAGCCCAGAAAGCCCTTGATTGGGCAATTGAGGAAAAATTGAAGTCAG GTGAAGGAGGAGAAATAAACGCTACACATTTACTTCTAGGAATATGGTCTCEST: gi|298168134|gb|HO013397.1|HO013397
genomic: ACCAGCCCAGAAAGCCCTTGATTGGGCAATTGAGGAAAAATTGAAGTCAGgtatgcatgg ... taaaatgcagGTGAAGGAGGAGAAATAAACGCTACACATTTACTTCTAGGAATATGGTCTC
EST: ACCAGCCCAGAAAGCCCTTGATTGGGCAATTGAGGAAAAATTGAAGTCAG GTGAAGGAGGAGAAATAAACGCTACACATTTACTTCTAGGAATATGGTCTC
genomic: ACCAGCCCAGAAAGCCCTTGATTGGGCAATTGAGGAAAAATTGAAGTCAGgtatgcatgg ... taaaatgcagGTGAAGGAGGAGAAATAAACGCTACACATTTACTTCTAGGAATATGGTCTC
aatattttttgttttctcttgtgtattcactaaattattatcatataaaatgcagGTGAAGGAGGAGAAATAAACGCTACACATTTACTTCTAGGAATATGGTCTCAAAAAGAATCAGCAGGTCAACAGATCTTGGCTACTCTAGGTTTCAATGA
cactaaa putative branch site (score: 2)
tgtattcactaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaccatgttgatcttcatcctgctagctaataaccttactttaatattttttgttttctcttgtgtattcactaaattattatcatataaaatgcagGTGAAGGAGGAGAAATAAACGCTACACATTTACTTCTAGGAATATGGTCTCAAAAAGAATCAGCAGGTCAACAGATCTTGGCTACTCTAGGTTTCAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - -ccatgtt
- - - - - - - - - - tcctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattc