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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcaatggaactttctcgagcttgtgtttctaatttattgtgctaattttaaaacctaatttaaaaggaattatgcagCTTTGACAGAGATGTAAGATGGCGTCCTGGGGTAGACCTAATACCTGTTCATTGTCGCAGTACTGACAATTTCGATTTAAATATCACTGCTCTTGAACAA

Basic information

species Glycine max
transcript GLYMA16G32860.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12690834|gb|BG157170.1|BG157170
EST:     TTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCATATTATCCTGG                         CTTTGACAGAGATGTAAGATGGCGTCCTGGGGTAGACCTAATACCTGTTCA
genomic: TTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCATATTATCCTGGgtaatcaatg ... aattatgcagCTTTGACAGAGATGTAAGATGGCGTCCTGGGGTAGACCTAATACCTGTTCA
EST: gi|17962963|gb|BM269718.1|BM269718
EST:     TTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCATATTATCCTGG                         CTTTGACAGAGATGTAAGATGGCGTCCTGGGGTAGACCTAATACCTGTTCA
genomic: TTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCATATTATCCTGGgtaatcaatg ... aattatgcagCTTTGACAGAGATGTAAGATGGCGTCCTGGGGTAGACCTAATACCTGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttctaatttattgtgctaattttaaaacctaatttaaaaggaattatgcagCTTTGACAGAGATGTAAGATGGCGTCCTGGGGTAGACCTAATACCTGTTCATTGTCGCAGTACTGACAATTTCGATTTAAATATCACTGCTCTTGAACAA
       taatttattgtgctaa  TA-rich tract