1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acaatttaatggaagagttgagaattgatcaccaaaaacattgataagcatcattaattatcttttccattatagtatatcttgactgcatatgctgcagGTGTGGGAATCAGCATCAAAAACAGTGCAAGAAGAAGAGGCAATAAAGCAGAAGTTATGTGAAGACTTAAGCAAACTG
species | Glycine max |
transcript | GLYMA16G32510.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACCGAGAAAATTCGTGTGGCAAAGATACAGGAAGAACAGGCACGCAAG GTGTGGGAATCAGCATCAAAAACAGTGCAAGAAGAAGAGGCAATAAAGCAGEST: gi|10843916|gb|BF067270.1|BF067270
genomic: CAACCGAGAAAATTCGTGTGGCAAAGATACAGGAAGAACAGGCACGCAAGgtatgcttct ... tatgctgcagGTGTGGGAATCAGCATCAAAAACAGTGCAAGAAGAAGAGGCAATAAAGCAG
EST: CAACCGAGAAAATTCGTGTGGCAAAGATACAGGAAGAACAGGCACGCAAG GTGTGGGAATCAGCATCAAAAACAGTGCAAGAAGATGAGGCAATAAAGCAG
genomic: CAACCGAGAAAATTCGTGTGGCAAAGATACAGGAAGAACAGGCACGCAAGgtatgcttct ... tatgctgcagGTGTGGGAATCAGCATCAAAAACAGTGCAAGAAGAAGAGGCAATAAAGCAG
aagcatcattaattatcttttccattatagtatatcttgactgcatatgctgcagGTGTGGGAATCAGCATCAAAAACAGTGCAAGAAGAAGAGGCAATAAAGCAGAAGTTATGTGAAGACTTAAGCAAACTG
tcttgac putative branch site (score: 3)
attaattatcttttcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaatttaatggaagagttgagaattgatcaccaaaaacattgataagcatcattaattatcttttccattatagtatatcttgactgcatatgctgcagGTGTGGGAATCAGCATCAAAAACAGTGCAAGAAGAAGAGGCAATAAAGCAGAAGTTATGTGAAGACTTAAGCAAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - -caccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactgc