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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattaaatgaatccttactggcatgaatttcacttcatgtttaacattgtatggttctgtacttttgttcaaaaatctgaaagtttgatgaatgcttcagATTCTGAATTTCAGGATCTGGTACCTATAGGGACTCGCTGTCTTCTAATCCAACCAGTGTTACAAGTTTCTAATGAAAGTGATACTGGCTTGCAAAAACC

Basic information

species Glycine max
transcript GLYMA16G32270.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039029|gb|BM307323.1|BM307323
EST:     TGCTGGCCTATATGATTTGAAAGACACCCTATATTTTCCTCAAGATGCAG                         ATTCTGAATTTCAGGATCTGGTACCTATAGGGACTCGCTGTCTTCTAATCC
genomic: TGCTGGCCTATATGATTTGAAAGACACCCTATATTTTCCTCAAGATGCAGgtattgataa ... aatgcttcagATTCTGAATTTCAGGATCTGGTACCTATAGGGACTCGCTGTCTTCTAATCC
EST: gi|9903232|gb|BE612200.1|BE612200
EST:     TGCTGGCCTATATGATTTGAAAGACACCCTATATTTTCCTCAAGATGCAG                         ATTCTGAATTTCAGGATCTGGTACCTATAGGGACTCGCTGTCTTCTAATCC
genomic: TGCTGGCCTATATGATTTGAAAGACACCCTATATTTTCCTCAAGATGCAGgtattgataa ... aatgcttcagATTCTGAATTTCAGGATCTGGTACCTATAGGGACTCGCTGTCTTCTAATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtatggttctgtacttttgttcaaaaatctgaaagtttgatgaatgcttcagATTCTGAATTTCAGGATCTGGTACCTATAGGGACTCGCTGTCTTCTAATCCAACCAGTGTTACAAGTTTCTAATGAAAGTGATACTGGCTTGCAAAAACC
                                     gtttgat  putative branch site (score: 5)
                 ttttgttcaaaaat  TA-rich tract