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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttattgatattaagaatgttttgaggcatgactattctacaaagctgtaatttttgtatgttatcttcttgctatttatttactttattccagtgcagTGTGCTGTCCAAGTTTGTAAACAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGCACTTTGATTGTGTACAACTGCTACTT

Basic information

species Glycine max
transcript GLYMA16G32090.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32090.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 5
------ttttattgata-ttaagaatgttttgaggcatgactattctacaaagctgtaatttttgtatgttatcttcttgctatttatttactttattccagtgcagTGTGCTGTCCAAGTTTGTAAACAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGCACTTTGATTGTGTACAACTGCTACTT
      |||| |   |  || ||| |  ||| |  | || |||||  | ||| |   || | |||    ||| ||  |   | |  | ||| |||||   | |||||||  ||| ||||||||||||| ||  |||||||||  ||||| ||||| ||||||||||||||||| |||||| | |||||||||||||| || ||||||
tagtgattttctgcttgcttcagagttatttcaaacttgcctattaaaaaaacc---aagtgttg----ttaactgttcattgtcgaattaatttatcttactgcagTGCTCTGGCCAAGTTTGTAAATAAGGCAGCTGATGGGGGTATCACTGCTCTTCATATGGCTGCATTGAATGGGTATTTTGATTGTGTACAGCTCCTACTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgtaatttttgtatgttatcttcttgctatttatttactttattccagtgcagTGTGCTGTCCAAGTTTGTAAACAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGCACTTTGATTGTGTACAACTGCTACTT
                                       ctttattcc  CT-rich tract
                         ttgctatttatttact  TA-rich tract