1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaaatgatatgaaataggttttgtacttattggtagcttttcctttttccttgcctatatgtagatcttgcatttgatatgtatttattatatgatctagGTGTCGTGGGCGCCAAACTGACCAGTTCAGTTCTATCACTGGCTAAAAGTTCAGATAAAAAACAAGGGAAGGTTGGTGTAGCTCAAAGCGCTTCGGTTTC
species | Glycine max |
transcript | GLYMA16G31900.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATGTATTTCCAATCAGT GTGTCGTGGGCGCCAAACTGACCAGTTCAGTTCTATCACTGGCTAAAAGTTEST: gi|24136092|gb|BU926602.1|BU926602
genomic: AATGTATTTCCAATCAGTgtaaagttcc ... tatgatctagGTGTCGTGGGCGCCAAACTGACCAGTTCAGTTCTATCACTGGCTAAAAGTT
EST: TTCTGAAGAATATATGTCTGTGCCCATCTCTGAATGTATTTCCAATCAGT GTGTCGTGGGCGCCAAACTGACCAGTTCAG
genomic: TTCTGAAGAATATATGTCTGTGCCCATCTCTGAATGTATTTCCAATCAGTgtaaagttcc ... tatgatctagGTGTCGTGGGCGCCAAACTGACCAGTTCAG
tttccttgcctatatgtagatcttgcatttgatatgtatttattatatgatctagGTGTCGTGGGCGCCAAACTGACCAGTTCAGTTCTATCACTGGCTAAAAGTTCAGATAAAAAACAAGGGAAGGTTGGTGTAGCTCAAAGCGCTTCGGTTTC
atttgat putative branch site (score: 5)
atttgatatgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatgatatgaaataggttttgtacttattggtagcttttcctttttccttgcctatatgtagatcttgcatttgatatgtatttattatatgatctagGTGTCGTGGGCGCCAAACTGACCAGTTCAGTTCTATCACTGGCTAAAAGTTCAGATAAAAAACAAGGGAAGGTTGGTGTAGCTCAAAGCGCTTCGGTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - tgatatg
- - - - - - - - ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattt