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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaaatgctacagttttctttaccttaaattttgcttatattgatcctgtaattttgttcatgaaaagtaaacatgggttattgaatatacttgttgccaaaaaaaattaaaagatactaactactttcttgtgtttgcaacattaaatgtttattccagTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGTGGCCAGTTGGTGAATCTAATTGTCAAGGGAATAAAATCCATCCATTGAG

Basic information

species Glycine max
transcript GLYMA16G29740.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053052|gb|BM731719.1|BM731719
EST:     CGAACAACACCTTGCAAACTGCCAATTTATCACCTG                         TGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
genomic: CGAACAACACCTTGCAAACTGCCAATTTATCTCCTGgtattaaatg ... tttattccagTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
EST: gi|58016997|gb|CX703739.1|CX703739
EST:     GNCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTG                         TGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
genomic: G-CGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTGgtattaaatg ... tttattccagTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
EST: gi|21479821|gb|BQ576504.1|BQ576504
EST:     TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTG                         TGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
genomic: TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTGgtattaaatg ... tttattccagTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
EST: gi|58016753|gb|CX703495.1|CX703495
EST:     TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTG                         TGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
genomic: TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTGgtattaaatg ... tttattccagTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
EST: gi|193546523|gb|FK501832.1|FK501832
EST:     TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTG                         TGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
genomic: TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTGgtattaaatg ... tttattccagTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
EST: gi|120531306|gb|EH259439.1|EH259439
EST:     TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTG                         TGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
genomic: TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTGgtattaaatg ... tttattccagTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
EST: gi|120528794|gb|EH256928.1|EH256928
EST:     TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTG                         TGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAA-CACTCCTAAAGTGT
genomic: TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTGgtattaaatg ... tttattccagTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
EST: gi|6666602|gb|AW278061.1|AW278061
EST:     TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTG                         TGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
genomic: TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTGgtattaaatg ... tttattccagTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
EST: gi|208179796|gb|GD978433.1|GD978433
EST:     TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTG                         TGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT
genomic: TGCGTCGTCCTGGTCGAACAACACCTTGCAAACTGCCAATTTATCTCCTGgtattaaatg ... tttattccagTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattaaaagatactaactactttcttgtgtttgcaacattaaatgtttattccagTGACAAAAGTGAATAATCCTTGCAGTAGCGGTGAAAGCACTCCTAAAGTGTGGCCAGTTGGTGAATCTAATTGTCAAGGGAATAAAATCCATCCATTGAG
          tactaac  putative branch site (score: 0)
                                             tttattcc  putative PPT
                                  aacattaaatgtttat  TA-rich tract