1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttacatgtataagaattttatttaatttctgttacacattttgaaaactgacattctgattatattttctttcttttcttcctttttttttttttcagTACCTTGAAGACACTAGCCCTCTTGGATCGGAAAACTCCAATGTCTAAGCTTGTTAATGCTTGGAAAAGGCAATTAGTTGGAAGTTATGATTGCTTTAGA
species | Glycine max |
transcript | GLYMA16G29550.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAATATTTGCTAATAAAATATCAAAGGTGCATGGCTGAAGCTTAACTAG TACCTTGAAGACACTAGCCCTCTTGGATCGGAAAACTCCAATGTCTAAGCTEST: gi|58024723|gb|CX711464.1|CX711464
genomic: GCAATATTTGCTAATAAAATATCAAAGGTGCATGGCTGAAGCTTAACTAGgtaataatat ... tttttttcagTACCTTGAAGACACTAGCCCTCTTGGATCGGAAAACTCCAATGTCTAAGCT
EST: GCAATATTTGCTAATAAAATATCAAAGGTGCATGGCTGAAGCTTAACTAG TACCTTGAAGACACTAGCCCTCTTGGATCGGAAAACTCCAATGTCTAAGCTEST: gi|51343398|gb|CO984131.1|CO984131
genomic: GCAATATTTGCTAATAAAATATCAAAGGTGCATGGCTGAAGCTTAACTAGgtaataatat ... tttttttcagTACCTTGAAGACACTAGCCCTCTTGGATCGGAAAACTCCAATGTCTAAGCT
EST: GCAATATTTGCTAATAAAATATCAAAGGTGCATGGCTGAAGCTTAACTAG TACCTTGAAGACACTAGCCCTCTTGGATCGGAAAACTCCAATGTCTAAGCT
genomic: GCAATATTTGCTAATAAAATATCAAAGGTGCATGGCTGAAGCTTAACTAGgtaataatat ... tttttttcagTACCTTGAAGACACTAGCCCTCTTGGATCGGAAAACTCCAATGTCTAAGCT
aaaactgacattctgattatattttctttcttttcttcctttttttttttttcagTACCTTGAAGACACTAGCCCTCTTGGATCGGAAAACTCCAATGTCTAAGCTTGTTAATGCTTGGAAAAGGCAATTAGTTGGAAGTTATGATTGCTTTAGA
ttatattttctttctt CT-rich tract
attatattttctttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttacatgtataagaattttatttaatttctgttacacattttgaaaactgacattctgattatattttctttcttttcttcctttttttttttttcagTACCTTGAAGACACTAGCCCTCTTGGATCGGAAAACTCCAATGTCTAAGCTTGTTAATGCTTGGAAAAGGCAATTAGTTGGAAGTTATGATTGCTTTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - -catgtat
- - - - - - - - - - - - - - - ctgttac