1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggcattccaattttttctctattcttttattatttctagttgaggacaaattttgaaggatcgatattttaatttttggcagaaaaattctgaattgtagGTGCCAGCTTGTTGAGGTGGAAAATGCAAAGAGACACTTTTAATTTGGAGGTGAGAAGGCATCTCTCACAGTTGGATTTGGAGACCGAGAGAGAATTAAG
species | Glycine max |
transcript | GLYMA16G29280.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGTCATGGTAGCAGTGAAAGTTTTCAAGTGGCGTCACAGACGATAGCTG GTGCCAGCTTGTTGAGGTGGAAAATGCAAAGAGACACTTTTAATTTEST: gi|120492328|gb|EH220495.1|EH220495
genomic: ATGTCATGGTAGCAGTGAAAGTTTTCAAGTGGCGTCACAGACGATAGCTGgtaacaatat ... tgaattgtagGTGCCAGCTTGTTGAGGTGGAAAATGCAAAGAGACACTTTTAATTT
EST: ATGTCATGGTAGCAGTGAAAGTTTTCAAGTGGCGTCACAGACGATAGCTG GTGCCAGCTTGTTGAGGTGGAAAATGCAAAGAGACACTTTTAATTTGGAGG
genomic: ATGTCATGGTAGCAGTGAAAGTTTTCAAGTGGCGTCACAGACGATAGCTGgtaacaatat ... tgaattgtagGTGCCAGCTTGTTGAGGTGGAAAATGCAAAGAGACACTTTTAATTTGGAGG
acaaattttgaaggatcgatattttaatttttggcagaaaaattctgaattgtagGTGCCAGCTTGTTGAGGTGGAAAATGCAAAGAGACACTTTTAATTTGGAGGTGAGAAGGCATCTCTCACAGTTGGATTTGGAGACCGAGAGAGAATTAAG
ttttaat putative branch site (score: 3)
atcgatattttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcattccaattttttctctattcttttattatttctagttgaggacaaattttgaaggatcgatattttaatttttggcagaaaaattctgaattgtagGTGCCAGCTTGTTGAGGTGGAAAATGCAAAGAGACACTTTTAATTTGGAGGTGAGAAGGCATCTCTCACAGTTGGATTTGGAGACCGAGAGAGAATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
-gcattcc
- - - - - - - - - - - - - - - - - - - gttgagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa